Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: -
Assembly: GCA_945859575.2
Location: OX243851.1:2545706-2548477[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.9e-09 8.6e-07 29.6 0.0 2 37 23 58 22 63 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.9e-09	8.6e-07	29.6	0.0	2	37	23	58	22	63	0.91

Sequence Information

Coding Sequence: ATGACTGAGCCGGGGAAAAAAAATAAAGGTGTATCAAAACCAAAACCGAAAAAACCAAATTATAGCGATGAGACACTCCGTAAAGCTTTACAAGATATACGTGATGAAAAGGAAAGTATTCGATCTGCTTGTAGAAAACACGGGATACCAAGATCTACTATACAAGATAGACTACATTGTCGCGTAACAGATGGACCAAGAAGAATGGGACCTACACCAGTACTCGGATTAGACGGAGAAAAAAAAATATGTCATTACATAATAGAAATGGCAAGACGAGGATTTCCTTTGAATAAAACAGTATTAATTAAAACGGTAGAAAAAATAGTAAAGGAATCGGGTCAAAAAAATCCATTTAAAGACGGCATACCAGGACAAAAGTGGCTAAACGCGTTTTTAAAGAGGCATCCAGAAATTTCAATGAGAGTATCGGAAAATATCAGTAAGGATAGAGCTTTAGTAACTGAAGCTAAAATAAGAGATTGGTTTAAAAATCTTCGTGAATATTTAACCGAGatagatgcccttgacattttgaatgatgctgacagagttttaaatggtgatgagtctggattttcattatgtccccaaactggaaaagttttagccccgaggggatataaaaacgtttatgaagttaaagcgagcaaagaaaaagaaaatataacagttttggtattatttactgcaagtggaaatatttgcccccctcttgtcatatttccatatgtacgacctcctcgttcaattgtacaaagcatgccaaaacagtgggtgctaggccgatccgagagtggttggatgcgtggcgatgtcttttttgaatatatttgtaacgatttcaatgactggctaattaaaaacaagattaaaaaacccgttcttctgttcgtagatggtcataaatctcatatgacaatacccttgagcgagttctgtgaaagtaacggaatcattttatatactctgccgccacggacgacacacatgcttcaacctgcagacgtgagtgtctttagaccattaaagcaaggttggaagaatactgttcgcgaattccattcacaatccgaaaatccatggagcagtgctataacaaaaactaacttttgtcctttatttgaaaaagccctgaatacgtttgatatgccccaacacataagaaatggattcaagaaatgtggtttgtttcccttagatgaagaggctgttgactacacgaaatgtgtcaaagataATGCTAAGTCCGTTAACCGGCGTTCATCTACTGGTATCACAATTGCAGACATAGACATTGCAATCAAGGTAATACGAGCTGCAAATCTTGATTCAAAGCATGGAATTGACACAAATATAATTTTGAAGGAATTAAATGATATGAAAACAAAAACTGGACGACGCAAATCCACTCCCAAACGTAAAAGCGCACAAAACTCTACTCCCAAATCTACTTCCCTACGAAAAAGTGCACAAGGTTCTACTCCCAAATCTACTTCCCAACGAAAAAGTTCACAAAAATCGACTCCCAAAACTACAAATTCACCCGATAAAAACGTACTTATACTTGACACTCCTATAGTTGGGTCATATGTTAATTTAGGCGATATTTCTGTTATCCCACTTGATTCCGATTATTCACTACCACTTAACATAACATCAAATTTATTAACAGAATCTGAGATTGCCTTGATAAACAATACAGATTTGAGCACAAATGTTCAAATTATGCACACAAGTCATGATTCGGACAAAACACACGTAAGTGAACTCAGTGCTGATATATTATGTAACTGGAGAGAGATAAGCGCACTTGATATTTGTTCTCACGATATTGATACACAAATAGAAAAGATTTCGGAAAATGTTCAGACAAACCTCGACTGCGCAAGCTTTAGTAAAGAAAGATCTGGAAAAGATACTCAGCAAATTCTTCAAGTTCAAGACATAGGCACAATCCACAATTTCACAAAACATACATTACTAGACTTAGACTCACAAAACGAAATATCTACGTCTTTTGTTACCACAGCACAAATTCACGAAGAAAATCCGTTAGCTAATCGACCTCGAAGTGAACGTGATCCTCGTCCCATGCCAAAAATTATAATCGCCAGTACTGAAAGCCAAATACAATCAGCTGATAGCTTGGAGCATGACAACCTTATTACACAACTCACAGATAAAGAAAATGAAGGTAATAACAAGACAAAATCAGCAATAAGAGAAAAACGTGAACCACTTGAAGCCATCGATTATTATGATCCATTTGTCAAACATTTAACGTACCCAAAAACAGATAGTCTTAAATCAAGCGTCCAAAAGAAACAAAGAGCAAACGTACAGCTCCCAAACGCAATTTCATCTGAGGCCTGGCGAAAACACTACGAAGTGAAAGAAAAAGAGAAAAAATCCAAAGAAGAAGCTATTAATGAAAGAAAATTACTGAGAAAAGAAGCTAAAGAAAACAAAGAAAAAGAGAAAATTATGAAACGTAAACGGATAACAGAGAAAAAAAATAAAACAAATGAACAAACTAAAGACCAAAATAGTAAAACTAAGTCTATAAAAAAGCACAAAGTGAAATTAAGTTCAAGAAGAAATATTCAAGATTCTGATGATCCTGATGATTATTGTGTAATTTGCGGCACAAATTATTTTAATAAAGAAGGACCTAACGTGGAATGGATACAGTGCGTTAGGTGCCAAAAGTGGTTGCACGTCACATGTAGCACCAATCCTGATATTTGTCCAAATTGTTTAAGTATTTAG
Protein Sequence: MTEPGKKNKGVSKPKPKKPNYSDETLRKALQDIRDEKESIRSACRKHGIPRSTIQDRLHCRVTDGPRRMGPTPVLGLDGEKKICHYIIEMARRGFPLNKTVLIKTVEKIVKESGQKNPFKDGIPGQKWLNAFLKRHPEISMRVSENISKDRALVTEAKIRDWFKNLREYLTEIDALDILNDADRVLNGDESGFSLCPQTGKVLAPRGYKNVYEVKASKEKENITVLVLFTASGNICPPLVIFPYVRPPRSIVQSMPKQWVLGRSESGWMRGDVFFEYICNDFNDWLIKNKIKKPVLLFVDGHKSHMTIPLSEFCESNGIILYTLPPRTTHMLQPADVSVFRPLKQGWKNTVREFHSQSENPWSSAITKTNFCPLFEKALNTFDMPQHIRNGFKKCGLFPLDEEAVDYTKCVKDNAKSVNRRSSTGITIADIDIAIKVIRAANLDSKHGIDTNIILKELNDMKTKTGRRKSTPKRKSAQNSTPKSTSLRKSAQGSTPKSTSQRKSSQKSTPKTTNSPDKNVLILDTPIVGSYVNLGDISVIPLDSDYSLPLNITSNLLTESEIALINNTDLSTNVQIMHTSHDSDKTHVSELSADILCNWREISALDICSHDIDTQIEKISENVQTNLDCASFSKERSGKDTQQILQVQDIGTIHNFTKHTLLDLDSQNEISTSFVTTAQIHEENPLANRPRSERDPRPMPKIIIASTESQIQSADSLEHDNLITQLTDKENEGNNKTKSAIREKREPLEAIDYYDPFVKHLTYPKTDSLKSSVQKKQRANVQLPNAISSEAWRKHYEVKEKEKKSKEEAINERKLLRKEAKENKEKEKIMKRKRITEKKNKTNEQTKDQNSKTKSIKKHKVKLSSRRNIQDSDDPDDYCVICGTNYFNKEGPNVEWIQCVRCQKWLHVTCSTNPDICPNCLSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00794397; iTF_00794398;
90% Identity: iTF_00794397; iTF_00794398;
80% Identity: iTF_00794398;