Htar030308.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- cheC_1
- Assembly
- GCA_945859575.2
- Location
- OX243853.1:9931048-9932919[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-10 6.1e-08 33.3 0.0 2 39 16 53 15 57 0.89
Sequence Information
- Coding Sequence
- ATGGTGAGAAATCGTAAACGGACAACTTCCAAGGCTAGCTGGTGTAATGAGGACTTGAGGCATGCTGCACAAGACATTGAAAAAGGCCTATCTTTAAGAGGAGCAGCAAAAAAGTACAACATACCATTTTCAACTTTACAAGAACGATTGAAAAAGCAAAATATAAGTAATCCAACATTGGGTAAGAAACCAGTTTTTACCAAAGATCAAGAAAGAAATATCGCAACCCAAGTAAAGGCACTATCTTCTATTTTCTACGGATTGACTATGACAGATCTTCGAAAACTTGTCTACAAATATGCAAGCATAAATAATATTAAAAATACCTTTAATAGGGAGACGCAAATGGCTGGCGTTGATTGGCTAAATAATTTCTTGCGACGCAATCCATCAGTAGCAGTGCGAAAGGCAGAAGCAACAAGTTTAAACAGAGTTGTGTCATTCAACAAACATGAGGTAACTATTTTTTATAACCTATTGGAAAGTTTGATGGAGAAACACAAATTTACCCCAAACAACATTTACAACGCTGACGAGACGGGAATTACAACAGTCACGGACCCTGGAAAAGTATTAGCAGAAAAAGGGCAGCGCAGGGTTGGTGCTATTACAAGTGGAGAACGTGGCAGAAACATAACTGTCATGTGTGCTATGAGTGCGGCAGAATGGTTAAAGCATTTTGCTGCTTATGCTAAACCATCTCCAGAGAGCCCTGTTCTTCTGGTAATTGATAACCACGCCAGTCATATTTCCCTTGCAGCCTACACTTATTGCAAGGAAACCAATATTATAATGCTGTCCATTCCGCCTCATAGTTCGCACCGAATCCAACCTCTTGATGTAGTATTTTATGGGCCTTTAAAAGCAGCGTATAGACAGGAGTGCAATCTATACATGAAATCACATTTGATGGCAAAAATAACACCATATGAGGTAGCTTCATTGTTCAATAAAGCATACTCCAATGTTGCAACTATTAGCAAAGGGGAAAATGGTTTTCGGGTTACGGGAATTTATCCTATAAATCCCAACGTGTTCTCGGAGCAAGATTTTTTAGCAGCATCTATGATGTCCGAAAATGCTAATGATATAATTGCAGTGGAACCAAGCGTTGAGATGGAGGAAAATACGCCACTTACAACTTCATCCAGACTTGCCGCTGATACAGAACAGACGATAGCCGGACCTTCTAATGCACTAATCGCTGACTTAATACCATGTCCATCCAGCCATACGACTAACGTCGATAAAGAGGTTTCTGGATCATCTCAAACACCAATAACTTTTGCTCAGATAGCACCTATGCCCACTCCTTCGACATCTTCAACACGTTCCACGTCTAGAAAGAGACAACATGCAACTTGTCTTACAGCAACACCCATGAAGGATGTATTAGAAGATAAAGAGGCCAGAAAAGATAAAACAAAGAAAAAAGGAGGCACAACGAAGCTTGAGTCGAAGAAAAAAATAAAAGCTAAGATGGTGAAAAATGTTGGCAACGTTAAGCGACGAGTCTTGCAAAGTTCCAGCTCTGAAGAAGAGGATATTGAGAATTTGTGTGATGATGACAGTTTGGACGATTTACCTACTGATACAGATGAGAACAAATGCATAATTTGTAAAGAGTTTGGTAGAAACAATGAGCTTTGGTATCGGTGTACTAATTGTGGTTATTGGGCACACGCCGATTGTACTGGTTGGGATTTCGCTGAGGGATACATTTGTGATCTTTGCATTAAGTAA
- Protein Sequence
- MVRNRKRTTSKASWCNEDLRHAAQDIEKGLSLRGAAKKYNIPFSTLQERLKKQNISNPTLGKKPVFTKDQERNIATQVKALSSIFYGLTMTDLRKLVYKYASINNIKNTFNRETQMAGVDWLNNFLRRNPSVAVRKAEATSLNRVVSFNKHEVTIFYNLLESLMEKHKFTPNNIYNADETGITTVTDPGKVLAEKGQRRVGAITSGERGRNITVMCAMSAAEWLKHFAAYAKPSPESPVLLVIDNHASHISLAAYTYCKETNIIMLSIPPHSSHRIQPLDVVFYGPLKAAYRQECNLYMKSHLMAKITPYEVASLFNKAYSNVATISKGENGFRVTGIYPINPNVFSEQDFLAASMMSENANDIIAVEPSVEMEENTPLTTSSRLAADTEQTIAGPSNALIADLIPCPSSHTTNVDKEVSGSSQTPITFAQIAPMPTPSTSSTRSTSRKRQHATCLTATPMKDVLEDKEARKDKTKKKGGTTKLESKKKIKAKMVKNVGNVKRRVLQSSSSEEEDIENLCDDDSLDDLPTDTDENKCIICKEFGRNNELWYRCTNCGYWAHADCTGWDFAEGYICDLCIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794328; iTF_00794340; iTF_00794338; iTF_00794339;
- 90% Identity
- iTF_00794340;
- 80% Identity
- -