Htar024598.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- -
- Assembly
- GCA_945859575.2
- Location
- OX243848.1:9925939-9927675[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-11 9e-09 35.9 0.0 2 41 19 59 18 60 0.94
Sequence Information
- Coding Sequence
- ATGCCGAGGGTATACAAGAGGAAATTAGGTTCTCGGCGGTACGCTGACTATACTAAAGAAAAATTACAGCTATGTTTACATGCTATCACATCTGGAAGTATGACTCAGAGACAAGCAAGCAAACACTTTGACATTCCTCGTCGAACTATCATATATAAGCTGAAAAAAGTTCACATGGGTCCACCAGGACCGCCATTAGTATTTTCTAATGAAGAAGAGGAAGCTATTGTAGCGCATGTAATAACAATGGGCACTTTTGGGTTCCCTTTGACGGAGTTCGACCTCAAGATGGTTGTTAAAACTTATTTGGAAAAATGTGGGCGTACTGTAAAAAAATTCAAAAACAATATGCCTGGAAATGACTGGCTCAAACAGTTTTTGAATCGTCACCATCAACTTTCAGTCCGTTTAGCTACAAATATAAAGAGGAGTCGTGCAGCTCTTAGCAAAGAAATTTTGCAAGACTATATTGTAGTAGTAGAAAACGTACCCCCAAGTCATATATTTAATTACGATGAAACCAATTTGACGGATGATCCCGGACAGAAAAAAGTAATAGTTCGTCGTGGATGTAAATACCCCGAGAAAATCTGCAACTCCTCAAAGGCCAGTACATCGATTATGTTTTGTGGAAGTGCCTTTGGCGAATTGGTACCTCCTTATGTCGTATATAAATCGATAAAATTGTGGAATACGTGGACGGAAAATGGCCCAACAAGTTGTCATTACAGTAACTCTCCCTCGGGTTGGTTTGACCATCAGTTATTTTCCGATTGGTTAGAATCTCTCATGATACCCAAACTGAAGAAATTAGAAGGCAAGAAGGTACTAATTGGGGATAACCTGGCCTCGCACTTGTCTGTGCATACACTAAAACTTTGCCGTGATAATGATATCTCATTTGTTTGTCTACCCGCTAACAGTAGTCACATTACACAACCTCTAGATGTGGCGTTTTTTCGTCCACTTAAAACCGAATGGAGGAAAATTCTCACAACGTGGAAAGAATCTGTAGAGGGATCTAAAAATACCACTGTGCCTAAACAAACGTTTCCCAGTCTTCTTAAACAGCTACTGGAAAACATATCACAAAACGCGGCGGAAAACCTTAAGAGTGGATTCCGTAAATGCGGCATTTATCCTTGCAACATAACAGAGTTGTTAGCGAGAATACCAGGGGAGACTTCTGTTACTGATCGAGAGGTGTTATCGGCGTCTTTCATCGAGCATTTAGAAAACAAGCGGAAGTCAGTCACAGACTGCACTGGAAAAACGAGAAAGAAGAAATTTGAAATCCCCGCTGGCAAAAGCATCTGTCACGAGATAAATTATGACTCTGATAAAGAAAATCCCACTACATCCAGACTATCTAACCGTGATACTGACCAATACTCGTTGCATGATGAATCCGATGATAACGGGTGTTTTTTAGACCCAGATAGCGCTAGGATCATTGTTGATTTTGACGACAAAGGTGCAACAGTTGATTGCATGTCGAAGTCTCTAAAGTCATGGAAATGGCCTCAAACAAAAGACACCAACTATTATGAGTGGGACGATATACTTGGCAGCATTGATCCTCCGAAAAAAATTTCGAAACGGGATTTTTATAGCGTAAAAGAGCTCGACAGCTTTAACTGA
- Protein Sequence
- MPRVYKRKLGSRRYADYTKEKLQLCLHAITSGSMTQRQASKHFDIPRRTIIYKLKKVHMGPPGPPLVFSNEEEEAIVAHVITMGTFGFPLTEFDLKMVVKTYLEKCGRTVKKFKNNMPGNDWLKQFLNRHHQLSVRLATNIKRSRAALSKEILQDYIVVVENVPPSHIFNYDETNLTDDPGQKKVIVRRGCKYPEKICNSSKASTSIMFCGSAFGELVPPYVVYKSIKLWNTWTENGPTSCHYSNSPSGWFDHQLFSDWLESLMIPKLKKLEGKKVLIGDNLASHLSVHTLKLCRDNDISFVCLPANSSHITQPLDVAFFRPLKTEWRKILTTWKESVEGSKNTTVPKQTFPSLLKQLLENISQNAAENLKSGFRKCGIYPCNITELLARIPGETSVTDREVLSASFIEHLENKRKSVTDCTGKTRKKKFEIPAGKSICHEINYDSDKENPTTSRLSNRDTDQYSLHDESDDNGCFLDPDSARIIVDFDDKGATVDCMSKSLKSWKWPQTKDTNYYEWDDILGSIDPPKKISKRDFYSVKELDSFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843430;
- 90% Identity
- iTF_00794311; iTF_00794316;
- 80% Identity
- -