Htar002292.1
Basic Information
- Insect
- Herminia tarsipennalis
- Gene Symbol
- TIGD6_1
- Assembly
- GCA_945859575.2
- Location
- OX243831.1:12980769-12984192[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-10 3.3e-08 34.1 0.0 2 39 11 48 10 52 0.95 2 2 9.7 1.2e+03 0.3 0.0 4 23 471 490 470 491 0.87
Sequence Information
- Coding Sequence
- ATGTCAAAAAGAAAATATAACACGTGGAGTAAAGAAGATATGGATGAAGCTATAAAAAAATACAACGAAGGGGCCTTACAATTTAACGAAGCTTGTCGTATATATAATGTACCGAAACCGACATTTAGACGACATTTAAAAGGACTAAATATACATCAAGGAATTGGACGTCCAAAAGATTTAACCGAGGATATGGAAAAAGAACTAGTCAGACACGTATTGCTGTTGGAATCTAGATTTTTTGGCTTAACAATAATCGACTTACGGCGCCTAGCTTACCAGTTAGCTGAAAAATATGGATTGAAACATAGATTCAATAACGAATCCCAACAGGCCGGATGGAAGTGGTATTACAAATTTATGAAAAATCACCCAGAAATATCCCTACGAACTCCGGAACCAACCTCTATGGCTCGCTGCAAAGGATTCAATAAAGAAACAGTCATGGCATTTTTTGACAAATACGAATCAATCATAGATGCAAGTAGATTTACACCTGACAAAATTTATAACATGGACGAGACTGGGCTAAGCACGGTACACAAGCCTTCTAAGGTTCTGGCTCAGAAAGGGAAACACCAAGTTGGAGCTGTCACTAGTGGTGAACGTGGTGTCAACACTACGTGCATTTGCTGTATGAATGCTGCTGGAGAATTCGTGCCACCCATGCTCATATTTAAGCGTAAAAGAATGACAGATGATTTAAAGCGTGGCGGGCCTCCAAACACATTGTACGATTGTTCAGAAAGTGGATGGATTTTGAGTTCCCTATTTATCAAATGGCTTCAACATTTTATAAGGTGTCTGAAACTACAAAAGTCAGAACGAAGTCAAATTTTACTTATTTTAGACGGTCATTCTACGCACATAAAAAACTTAGATGCGATCAATATAGCACGAGAATACGGCATAATTATGCTCTCTCTGCCAGCTCACACCACACATAAGTTACAACCACTTGACAGGACTTTTTTCAAATCACTAAAACAGAAATTTAATGCTTCTTGTACTTCATGGATGCGAAATCATCCTGGTTCGGTAATAAAGCAAGCAAACATTGCTGAAATTTTAGGTGAGGCATATCCTAAAGCCGTTTGTATGGACACGGGTATACATGGCTTCGAATCCTGCGGATTATGGCCTTGTAATCGATTCAAGATCAGAGATGAGGAATACGTTGTTCTGGACGAAGATGTCAATCCAAATGAATCAGAGAATGTCTCCCAAAGACAAGTAGAACACACAAGCACAATGACATCATGTGTGGAACAATCCAATCAGTCTATTGAGCAAGAACAGATTGAAGAAGTGGATAATTTACAACTTTGTGAGACAGCTGGCCCTTCGGATAAATCGAACAAGCACCCGGACATTTCTAATACAGAGACTGTTAGAGAGGACTTCAGTAAAGCCTTCGATAAAGCGTCTCATGCTATAATGATAAAAAAGGTGTCAATATACCAATTATCTGGTAACCTATTAAAATGGATTCAGTCGTCTCCGGCCAACCGCTGCTTCTTTGTAGTGGCTAACGGGTTTAGATACCCCAGTTGA
- Protein Sequence
- MSKRKYNTWSKEDMDEAIKKYNEGALQFNEACRIYNVPKPTFRRHLKGLNIHQGIGRPKDLTEDMEKELVRHVLLLESRFFGLTIIDLRRLAYQLAEKYGLKHRFNNESQQAGWKWYYKFMKNHPEISLRTPEPTSMARCKGFNKETVMAFFDKYESIIDASRFTPDKIYNMDETGLSTVHKPSKVLAQKGKHQVGAVTSGERGVNTTCICCMNAAGEFVPPMLIFKRKRMTDDLKRGGPPNTLYDCSESGWILSSLFIKWLQHFIRCLKLQKSERSQILLILDGHSTHIKNLDAINIAREYGIIMLSLPAHTTHKLQPLDRTFFKSLKQKFNASCTSWMRNHPGSVIKQANIAEILGEAYPKAVCMDTGIHGFESCGLWPCNRFKIRDEEYVVLDEDVNPNESENVSQRQVEHTSTMTSCVEQSNQSIEQEQIEEVDNLQLCETAGPSDKSNKHPDISNTETVREDFSKAFDKASHAIMIKKVSIYQLSGNLLKWIQSSPANRCFFVVANGFRYPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00794323;
- 90% Identity
- iTF_00794323;
- 80% Identity
- -