Basic Information

Insect: Herminia tarsipennalis
Gene Symbol: -
Assembly: GCA_945859575.2
Location: OX243835.1:6870232-6891081[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.1e-13 1.4e-11 44.9 0.0 4 42 114 153 112 156 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.1e-13	1.4e-11	44.9	0.0	4	42	114	153	112	156	0.94

Sequence Information

Coding Sequence: ATGGGGAAGAAGCGAGTAGCGATTTATCGCTCAAGAAATGTAGAGCAGATGTATTTTGTAGATGACGGGCCGTGTAAACAAAAGAGATGCAGTATAGAGCGAGTACTCGCTGGCAGTAGGACCGATAATGAGTGCACGTTTATAACAACAGCCAAGGGCAACCAACTGCTGCTAGTCAACGAGTACACATACTCCCATGCCAGAAGGAATGATAAGAGAGACACGGATGATTGGACATGCACATCTTGCTCCGACAAGAAGTGCAAGGCAGTAATAGTAGTAGACTCCGCAAACCAAATTATGTACCTTAAGAGTGGTTCTAAAAGATACACGTTGGCGACCCTCCAAAAAGCTTTAGATGATATTAAAAGTGGAGCCCTCTCTGTTCGTAAAGCGGCCAAAATTTATGACATACCGAATCAAACTCTTTACGACAAAATAAAACAAAGACACGTCAAACAACAGCTACCAGGAGCTCCAACTGTCCTGAAACCGGATGAAGAAGCCATGGTGACAAATTGGATACTCAATACAACAGAATTGGGTTTTCCGGTAACTAAAAAAATGGTAATACAGTCTGTGACGAAATTAGTGACTGAATTCGACCGACCACTTAAATTTAGGCTGGGACTACCTGGTCGATCTTGGTATAGTGGTTTCGTCAAGAGGAATGTTATTCTTAAAGATAAAGTTCTTAAAACGTTGAATACTACTCGTATTAATATCACTGAAGAAGAAACAAGAGCCTGGTTTACACGCATATCACTGTATTTCAAGAAAATCAATCGCGTGGATGTACTCGAGGATCCTTCTAGAATATTTTATTGTGATGAATCAGCATATTATATCGGTCCTAAAGGTCAAGCTACTCAGACCAGAAAAGATGGAAAACACGTATTTAATAAATTTGGTTACGATGAACAGGAATGTCTAACTCTCTCAATAGGTGCATCAGCAGATGGGAAATTGATGACCACATTAGCAATATTTCCTTGTGAGACAATTCCAGATTTAGAGAAATATCCCAAATCTTGGTCTTGTGGCAGAAGTAAAAACAGATGGATGACTCCAGAGAATTTTTACGAATACATTGTCAACGTTTTCAATCCAATTTTGACCAACGAAAATGTGAAAAAACCTGTAGTTTTGTTTTTGGATGCCCATGTCTCGTTCTTATCTCTGGAAGTATGTGAGTTTTGTAGCACTAACGGAATTATTTTAGTTGCATTGACACCAAGTACAACTCGTATCCTACATCCCTTGGATACGGCCATATTCCAAGGCTTAAAGGAGGCTTGGAAAAAAGGTGTTGAAGCTTGGCGAAGTGTAAATGACAGTCGCATGAAACGGGAAGATTTCGGGCCAGTACTGGAAAAGTGCATTTCGGAAATCTTTAAACCAGAAATAATACAAAATGGGTTTCTGCATTCTGGTCTGTTTCCTTTTAATGAAAATGCAATTGATTACACAAAACTGAACCGGTCGAATTTCCAGTTCGTAAAATCGCATACAGGCAACGACATGATTCTACTGCATGGGTACACGTACTCACGCCATAAGAAGTTTGAAGCTAAAGGGACATACCATTGGAGATGCTCCTACCACAACAGCAAGCGATGCTCATCCAAAATCGTTCTAAATAGCCAAGACTGCGTTGTATCTGGAAGATACGATCACAACCATTTACCACCTAAATACTCGCTTGTGAATGGGGAATATATTAAAATGAAGTACATGAAGCATTACAAACTAGTACCGTCAAGGTCGGGAAAACAGCTTCTTTTACTTAACGACTACACCTACAGCCATAGTCGAATGTTCCAGAAGAAAGGCACCAGCCACTGGCGCTGCTCATCTCATAATAGCAAGGGCTGCTACAGGTTGATTCCCTTACCTACTGGCAGTTACCTTCTGCAGATCGGAACCCACACGTACTCCACCAATCGCGTCAACTTCACGGGCAAGTGCACCTGGTACTGTTCTAAGCGAGTCAGCAAGAGATGCCCAGTCCGAGTCAAAATGATTAACCAAGAAGTCGTGGGACTCTTCGATATAGAAGGTGACACAGATACTACGGATACTGAAATAATTTCGAAGTTACTGAACAGAAAACCTTCTGTAACTGTATCTGAAAACTTTGATCCAAGTCTAAACGAATGTACCTTGGACACTAATCCAGATGTCGGACTTTTAGATGGTGATTTGCGGGATGTAATAAATGGCGACAATTCTCAACTCAGCACTTGTAAAGAAGTCCCCGGTACAGCAGCACTCACCAGTGGTAGTTTAGACCCAGTACTTACTACCTGCAATCTTCCTCCGGCTTTAATCACCAGTAGCTCAGATAACGTCACTAAAGCCCAAAATCAAGCAGAAGTAGTTCCAGAAGTTCCGTCTATACCTGGACCATCGTCTGAAGAAGTTCCTGCCCCTCCAGAGAAGGCCGCTGCTCCTCCCACACAATCAACAGTAACAGCTCCTCCTCCCGCTGCCTTGGGGAAAGTTGTGGAGCCAATTAAATGTACCACGGATTTGGAGTGCCATTTCTTCAGAAGCAGTCGAGGTAGAAGGATGCTTATGGTTGGCGATATAAAATACAGAATCAATAGCGTAACCCCTGACAAGGTGAGGTGGCGATGTGCGTCTCACGAGCGATACGGGTGCAAATCAAGAATCCATACTATTGAAAACAAGATTGTGTATTTTATCAACGAACACATAACCAACTCTGCCAACGAAAATGAGGGATGTGATGATATAGCACCTGTGGGAATTATAAACGGTGATCCATAA
Protein Sequence: MGKKRVAIYRSRNVEQMYFVDDGPCKQKRCSIERVLAGSRTDNECTFITTAKGNQLLLVNEYTYSHARRNDKRDTDDWTCTSCSDKKCKAVIVVDSANQIMYLKSGSKRYTLATLQKALDDIKSGALSVRKAAKIYDIPNQTLYDKIKQRHVKQQLPGAPTVLKPDEEAMVTNWILNTTELGFPVTKKMVIQSVTKLVTEFDRPLKFRLGLPGRSWYSGFVKRNVILKDKVLKTLNTTRINITEEETRAWFTRISLYFKKINRVDVLEDPSRIFYCDESAYYIGPKGQATQTRKDGKHVFNKFGYDEQECLTLSIGASADGKLMTTLAIFPCETIPDLEKYPKSWSCGRSKNRWMTPENFYEYIVNVFNPILTNENVKKPVVLFLDAHVSFLSLEVCEFCSTNGIILVALTPSTTRILHPLDTAIFQGLKEAWKKGVEAWRSVNDSRMKREDFGPVLEKCISEIFKPEIIQNGFLHSGLFPFNENAIDYTKLNRSNFQFVKSHTGNDMILLHGYTYSRHKKFEAKGTYHWRCSYHNSKRCSSKIVLNSQDCVVSGRYDHNHLPPKYSLVNGEYIKMKYMKHYKLVPSRSGKQLLLLNDYTYSHSRMFQKKGTSHWRCSSHNSKGCYRLIPLPTGSYLLQIGTHTYSTNRVNFTGKCTWYCSKRVSKRCPVRVKMINQEVVGLFDIEGDTDTTDTEIISKLLNRKPSVTVSENFDPSLNECTLDTNPDVGLLDGDLRDVINGDNSQLSTCKEVPGTAALTSGSLDPVLTTCNLPPALITSSSDNVTKAQNQAEVVPEVPSIPGPSSEEVPAPPEKAAAPPTQSTVTAPPPAALGKVVEPIKCTTDLECHFFRSSRGRRMLMVGDIKYRINSVTPDKVRWRCASHERYGCKSRIHTIENKIVYFINEHITNSANENEGCDDIAPVGIINGDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -