Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.6e-11 5.7e-09 36.6 0.0 4 39 53 89 50 93 0.89

2 4 2.5e-10 3.1e-08 34.2 0.3 2 39 105 142 104 146 0.92

3 4 1.3e-13 1.6e-11 44.7 0.0 2 45 160 204 159 204 0.96

4 4 1.6e-17 2e-15 57.2 0.0 1 42 211 253 211 256 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.6e-11	5.7e-09	36.6	0.0	4	39	53	89	50	93	0.89
2	4	2.5e-10	3.1e-08	34.2	0.3	2	39	105	142	104	146	0.92
3	4	1.3e-13	1.6e-11	44.7	0.0	2	45	160	204	159	204	0.96
4	4	1.6e-17	2e-15	57.2	0.0	1	42	211	253	211	256	0.95

Coding Sequence: ATGGCGTTTAATTTGCATGTGGTGAAAAAAAGTCGAAAGTTATGCTTGGATAATTGTTATGAACAACCGCACCTCAGCGGTGAAGATACGAGTGATTCCTGTGGCAGGCAATCATCGCCCGCGCCTCGTCATAGTCCCAAAAGTTGGACACAACAGGACATGGAACGAGCATTAGATGCGCTCAGGAAACATCAGATGAGTCTCACTAAGGCATCGGCAACGTACGGTATTCCGTCCACGACACTATGGCAGCGCGCGCACCGATTGGGCATCGACACGCCGAAGAAGGAGGGCGCGGCCAAGTCGTGGAGCGAGGCCGACCTGCGCGGCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCTAGCAAAGCCTACGGTATCCCGAGCAGCACTTTATATAAAATAGCTCGTCGCGAGGGGATCCGCCTGTCAGCGCCGTTTAATGCGGCCCCTACGTCCTGGCGTCGAGCTGATCTCCAGCTGGCTCTCGCTTCAATACGCTGTGGGGCTAGCTCTGTGCAACGCGCCGCTACTACTTATGGAATTCCTACTGGTACACTGTATGGTCGTTGTAAACGTGAAGGCATCGAGCTGTCCCGATCTAACCCAACACCATGGTCTGAAGACGCGATGGGCGAAGCACTTGAGGCAGTCAGAGTGGGGCAGATGTCGATAAATCAGGCAGCGATACACTACAACTTGCCTTATTCTTCTCTCTACGGCAGATTCAAAAGATGCAAATACCAAATACAGAGCATGCCTCAAAACCAACAACAGCAGCAAGATATTCAGAAATCAGAAATGGACGCTCAACACCCCGAGGCTCATCAGTATTACCACCAGGTTCCACCAACTCAGGACCATGAACCGCTAACATACCTCATGACCGACTACCACCACGACACTCATATGCACGACCAGTATTCTCAGTACTACCAACCCTTCAACAGTATAGCGACCAGCTGA
Protein Sequence: MAFNLHVVKKSRKLCLDNCYEQPHLSGEDTSDSCGRQSSPAPRHSPKSWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQSMPQNQQQQQDIQKSEMDAQHPEAHQYYHQVPPTQDHEPLTYLMTDYHHDTHMHDQYSQYYQPFNSIATS

Sequence clustering based on sequence similarity using MMseqs2