Hill007696.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- -
- Assembly
- GCA_905115235.1
- Location
- NC:7226423-7235858[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.1 1.1e+02 3.1 0.4 3 23 87 108 86 108 0.96 2 16 0.059 3.2 8.0 1.3 3 23 181 201 179 201 0.96 3 16 5.1e-06 0.00028 20.8 1.9 2 21 264 283 263 284 0.94 4 16 1 54 4.1 1.4 5 23 370 388 367 388 0.92 5 16 1.6 89 3.5 0.1 1 23 400 423 400 423 0.89 6 16 1 56 4.1 0.7 2 23 439 460 438 460 0.93 7 16 3.1e-05 0.0017 18.3 0.1 1 23 467 489 467 489 0.97 8 16 3e-05 0.0016 18.4 2.1 1 23 495 518 495 518 0.95 9 16 0.068 3.7 7.8 2.7 5 23 562 580 559 580 0.90 10 16 1.2 63 3.9 1.2 5 23 674 692 671 692 0.92 11 16 0.49 27 5.1 0.0 1 23 703 726 703 726 0.92 12 16 0.76 42 4.5 2.5 2 23 742 763 741 763 0.92 13 16 0.0002 0.011 15.8 0.2 1 19 770 788 770 792 0.94 14 16 0.0001 0.0056 16.7 4.2 1 23 798 821 798 821 0.97 15 16 0.64 35 4.7 0.4 5 23 866 884 863 884 0.92 16 16 0.22 12 6.2 2.4 1 23 895 918 895 918 0.96
Sequence Information
- Coding Sequence
- atgggaTTGTTTTCTTTGGCAGAGACAGTTTCTGTTTATTGTGCAGGATTCGATGCTCAAGCAAACATTTTAATTATGGATTcgatatttttattgaattcggGACTACAGACCGACGTAAAATTGGAGGAAAAAATTCTAGATAAATCCATAGAAGACTATGGATCTGTGTGGACACGTCCTGACTCTCCCACTATCGACTGGACATCGGAGTGTGGTCGTATTCTGATATCAACCGAAGGAAAATATACCGTTGCTTGCAATAGCTGCAGTGATCGCTTTAATAGTGTAGGGTCCTTCGGGAATCATTTGAAAACTGTCCACCCGGACTATGGCGAAGAGGAGGAGGTCCTACCCGAAAACGATGAAATTCGATGTAAAGGAGCTGATACAACAGATGGGATCGTGACCGCTACATCGCAGATACAGCAGAATCGAAGAAACACGAAACTTGCacgttacaaaaactgttcgaatacTCCAAAGAAACCAACTGTGATAATTTCGGCCGAGCCTTTTTATGACGAGAAAAGACTCTTTTGTGTTACATGCGATCGTCAGTTAGCTTCAAGACAGGCCTTCACGCGACATAAGAGGTATCATAAGGACCAATTCCCAAAACAGGGAATGACCTATTTGAATCATGACGACGAGGAAGATACGTCAAATGAAACTACAGTCAAGGATGAACTTGATATTGGCGACTATGAATTCCAGGATTCAGTATACGATGCCGAAAGCGTTGAGAAAATTGACGGCAACGAACTCATGCATAGAGAAGATCCAATTCGCTGTTTACACTGTCTTAAAACCTTTTCAACCAAATCAAATCTTAAACGCCATATTCAAAGCTTAAAGGCGGAAGACAAACCGCAATTTTATCGGACCGTATTCACATTGGAGCCCAAGTATGACgagaaaaaacatttttgtatATCATGCAATGTTCAAATGAATTCGCAGGAAACATTCATACATCATAAGAAGGAGCATAAATCGGTTATTCGAAGATGGAAGACCCGCAACGGCTTGAGATTGCCTGGAAAAAATCTCAAACCTGTGTTTTCTGAAAACCCCGATTTTGACGACGAGAACAACTTTTGCATCACGTGCAATCGTGAATTTGTCTCGAAGGGCAGATTTCTGAAACATAAATTGTTACATATGAAGGACTCAACTAATCCAAAACTTccgacatttttttgtgaattatgTCCTGGAAAATTTATGTCAGATTTTGGATTAAGAGATCATATCGTGGCGAACCATGGAGATGAGATTCCAAAGTCTCTACAAAACGATCCAACGTACCTGGAATGTCGATTTTGTTTTAAGGAATTTGCAAAACCAACGGAACGTTACCAACATGAGGAGAGCCACATTAAAGAGCGAAAGAAATATCGGTGTCCTTTATGCCCAAAATCATTCGCCACAAATTCAGAACGCATAGCTCATGAATCTGTTCACAGAGAAGATCAGCCCTATCGTTGTGAGCAATGTCCTCAATCATTCAGatttaaaacaaattttaaCCGTCACGTTAAGGATGTTCATTTTGGCATAAAATCGACCAATGTTGCACTTGTTAAGGCAGAGGGTGCTgccaaaaatgagaaaatgggACGAGTCAAAACTGTGTTTTCTGTGAACCCCAATTTCGACGATGAGAAAAATTTTTGTATCACATGCAATCGGGAGTTTAGCTCGAAGTCTAGTTTTAATACCCATAAATTTCTGCATAGGAGAATGATCCGGATAAAACAAGCCAGATTCAAAGAGCCAACAGAACGtgatatacataaaaaggatcgGTCTGCTGCAGAGGGTCATGACCAATCTAATCGTCCGCTTGAATCTCCGAGCTCTCCACAAGAGGATCCATTTGTAGACCGCAAAATTCACGACGGTATAAAACCGGCAAATGACGAGGACACTATCAAAACTGAGAAAATGAGACGAACCCAAATGGTTGTGTTTTCCGAAAATCCGAAATTCGATGACGAGAAAAACTTTTGCATCACATGCAATCGTGAATTCGCCTTGAGGGCCACCTTCAATAAACATAAATTATTACATAAGAATTTAATTAATCCAAAACATCCGACATATTTGTGTGAATTGTGTCCTGGAAAATTTATCTCAGATTTTGGATTAAGAGATCACATTGTGGTGAACCATGGAGATGAGATTCCAAAGTCTCTACAAAATGACCCAACGTACCTAAAGTGCCGATTTTGTCATAAGCAATTTCCTAAGCCTACAGAACGTTACGAACATGAGGAGAGCCACGCTAAAGAGCAAAGGCCATATCGTTGTCCGTTATGTCCAAAATCTTTCGCCACAAATTCAGAACGCAAAATTCACGAACCTATTCATGGAGAAGATCGGCCATATCGTTGTGAACGATGTCCTCAATCATTCAGACATAAGACAAGCTTTAATCGCCACGTTAAAAATGTACATTTTGGCATCAAACCGACAAAAGGCGCATCGGTTCAGGTAGGGAGTGCTACCAAAAATGGGAAAGTGAGACGAAACAAAACGATGGTGTTTTCCGAAAACCCCAGTTTCGACGACGAGAAAAATTTTTGTATCACGTGCAATGTTGAATTCGCCACCAGCGTCAGTCTTAGTACTCATAAGTTACTGCATCAGAGTATGATCCTGAGAAAACAAGCCAAATTTTCTTGTAGATTTTGCTCGAGACAATTTAAATCAGACTTAGAATTGAGAGGGCATATTGCAATGTGCCATGGAGAAGAGGTCCAGAAATCCTCGCAAGACGATCCAGTGAACTCGACTTGA
- Protein Sequence
- MGLFSLAETVSVYCAGFDAQANILIMDSIFLLNSGLQTDVKLEEKILDKSIEDYGSVWTRPDSPTIDWTSECGRILISTEGKYTVACNSCSDRFNSVGSFGNHLKTVHPDYGEEEEVLPENDEIRCKGADTTDGIVTATSQIQQNRRNTKLARYKNCSNTPKKPTVIISAEPFYDEKRLFCVTCDRQLASRQAFTRHKRYHKDQFPKQGMTYLNHDDEEDTSNETTVKDELDIGDYEFQDSVYDAESVEKIDGNELMHREDPIRCLHCLKTFSTKSNLKRHIQSLKAEDKPQFYRTVFTLEPKYDEKKHFCISCNVQMNSQETFIHHKKEHKSVIRRWKTRNGLRLPGKNLKPVFSENPDFDDENNFCITCNREFVSKGRFLKHKLLHMKDSTNPKLPTFFCELCPGKFMSDFGLRDHIVANHGDEIPKSLQNDPTYLECRFCFKEFAKPTERYQHEESHIKERKKYRCPLCPKSFATNSERIAHESVHREDQPYRCEQCPQSFRFKTNFNRHVKDVHFGIKSTNVALVKAEGAAKNEKMGRVKTVFSVNPNFDDEKNFCITCNREFSSKSSFNTHKFLHRRMIRIKQARFKEPTERDIHKKDRSAAEGHDQSNRPLESPSSPQEDPFVDRKIHDGIKPANDEDTIKTEKMRRTQMVVFSENPKFDDEKNFCITCNREFALRATFNKHKLLHKNLINPKHPTYLCELCPGKFISDFGLRDHIVVNHGDEIPKSLQNDPTYLKCRFCHKQFPKPTERYEHEESHAKEQRPYRCPLCPKSFATNSERKIHEPIHGEDRPYRCERCPQSFRHKTSFNRHVKNVHFGIKPTKGASVQVGSATKNGKVRRNKTMVFSENPSFDDEKNFCITCNVEFATSVSLSTHKLLHQSMILRKQAKFSCRFCSRQFKSDLELRGHIAMCHGEEVQKSSQDDPVNST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -