Hill003566.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- prdm10
- Assembly
- GCA_905115235.1
- Location
- NC:211518836-211532909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5e-05 0.0014 18.6 0.2 2 23 496 517 495 517 0.96 2 11 7.4e-06 0.0004 20.3 0.9 2 23 549 570 548 570 0.95 3 11 0.00023 0.013 15.6 1.2 1 23 588 610 588 610 0.98 4 11 0.0003 0.016 15.2 6.8 1 23 618 640 618 640 0.98 5 11 0.0025 0.14 12.3 0.6 1 23 645 667 645 667 0.97 6 11 0.012 0.63 10.2 3.7 1 23 673 696 673 696 0.97 7 11 0.00096 0.052 13.6 3.2 1 20 701 720 701 723 0.94 8 11 3.3e-06 0.00018 21.4 1.5 1 23 729 752 729 752 0.95 9 11 0.0014 0.075 13.1 0.5 1 23 814 837 814 837 0.96 10 11 0.0081 0.44 10.7 2.6 1 23 859 882 859 882 0.96 11 11 0.75 41 4.5 5.2 1 23 913 936 913 936 0.97
Sequence Information
- Coding Sequence
- ATGGAAATGGAGCTGGATCCTACCGACGCAGGGCATGACGACAAATACTATGCCTACAATCGGATCAGTGCATATGACCCCAATATGTGCTCTACGGCACGGTTCAGCCCGCCGTACAACAATGAACAAGTTACAGAAACGCAGGAAGGAGATGGTTATGAAAACGTAATCCTAATCCCTTGCACAACGACTGAAAATGAAACCCAATGCATCGAACGCTCCACGATAAGTACAAGCGAGATCTGCTCTACTTATACCGTCCCAGTTTCCGCGCGCCAATATGCAAATCAGTTTGAGCCGCCACATCAAGGTTTCTCCTCAACCCAGAACAATGCTCGCGAAAGTCAAGTTAAAAACTATCAGAGCGAACCCTTGGAGCCACAGATAACCCAAATAGTATTACGGCAATCCCCGAATGGGACACTTTATCACAACTATTACGTAACGAGTAATGTAAAAGTTGAACTTATGTCGAGCTCGGGGGACAATACGTTTCGTGAAAACTTTGTTGCAGTGAAGGGAAGCGAGCGTGAAACTCAACAAGAGTATGCTTACGGCACTAAAATAGCGCCCAATGGTGAACTTATAGGTCATCTTTCAGATGCCAATTTCGTTCAATTGGGTCATGGTCTCATCGCGGAGCAAAGTCAAGAAGAGTTTCTTTCGGCAACTTACAATGCAATCCCTCCTTCGAACACCGCCATAACTCTGCATGACAAAGATCCACAGCGACTGCTTCTGGAAAGCACAATGTCGCCTCTACTTGCTGCCGTGAATGACATAACACAAAGAGATGCTGAATTGCAATCATATTTGAATCAAAGCCTAGGGAAGGAGACTGAGCTCGGAGTGTTCAACCGCAATACAGGTTTCAGAGAGCAGAGGGATGATTACGTGCAGACAAACCAATCGGAACAAGTTGGGACAAATGATGCAAGTTCAGCGCGAAACAGTTTGCAAGTCGAGAATGATGAAGAAGATTTTCTGTTGGTCACAGATAAACCCGTGGAGAGTAGAGCGAGAGCTAGTCTTCCGACAAATTATTTGTATTTCGGGAACAGTCCTGACAATTCAAACGGGGATATTTCAGTTTTCGCCAAACGAGAGATCCCAGCACGCACAAAATTCGGGCCATTTGAGGGTGAACTCCGCTTATCCAGTGATGTAATATCTGACGTGCTTTTAATCCAAGCATCCAACACCTATCCCCTGCTTCTAATCAACGATACTCATATACTGGACGTTTCTAACGAAAATACATGTAACTGGATGCGATTCGTAAGATTGGCGAAAAATTACACAGAACAAAACTTGCTACTATTCGAAGAATCCGGGAAACTTTACTTCAGATCCTGTCAAGTGATTCATGCGAAACAAGAAATCAAAGTCGGATACAGTGAATCATATGCGAAACACTACGATTTAAAAACCATCAGTCCTACGGAGTCGGAACTTCGGGAAATATTCAACCGAGATCACCCTTGGCCATGTTTTGAATGCGATGAACGCTTTTCATCATCAAAAGATCTGCAGAATCACTTGAGCATTCATGACATTGACGATGAATTGGTTAAGCCGAAAATCTCTcgcagaaagaagaaaatacGCAACAAACATTTAGTGGATATTCGGAAAAATTCTATTCGCTGCCTCTACTGTAACAAAGTGTTCATGACTAATTCTAGTTTGAAAAAGCATATTAGTGGACACTTAACTGGACGCCGAACAGTCAGCAACAGAAATTGCTACCCATATAAAATATTCCGATGTGAAACGTGTTATAAGAAGTTCGCCACGGATGATAAACTTAAGGCTCATCGACTAGTCCATATTAAAAATGATTCAAAGCCCTTCAAATGCTCTCATTGTAATCGATGCTGCTCAACTCCAACCGCATTGACTGCTCATCTCACCAGCCACAGCCTTAGATACTTCAGTTGTGTTTTTTGTGCTGAGAAATTTACAAACGTTTCGGAATTCAGGAATCACATAGTGACACATTCAGTCAATGGAACGTATTCATGCCAATGGTGTAAAAAGAAATACTCAGAATATCATTTAGTCAGAAAACATGTTCGTATCTTTCATCAGTCCTTTAAATATCCTTGTAACGAATGTGGTCGCAAATTCCCAAATCTGACATTTTTAAAACGTCACAAACTATGCCATTCAGAGAAATTTGAATATCTATGTTCTCAATGTGGGAAGCAATTCAAGCGCAAAGATAAACTTCGTGAACATATTCAACGTATTCATTCAGAAAAACGAAAACATCGCATTACTAAAAGAATTTCTGTTACTACTTCCCCGGAACGAAGCCCAGACCAAGAATCTAGTGAACATAATCCCACATGTTACGAGTGGAATTCCAAAAGAATCAATCAGCGAGAACAAGACACTATACAAGCTAAGCCTTTAGAGGATTATCGTAACTACATGTATAAATGCGACGATTGTATGCTTGGATTCAAGCGACGTGGTATGCTCGTAAATCACATGGTGAAACGACATCCAAATGTCTCGATTGAATCTATTCCTGAACTCAATCTTCCGATTTTGAAGCCGCAATCATTATTTTTCTGTCAATACTGTTCGAAAGTATATAAAAGTAATGCAAAGAGAAAGCTACATATACTTAAAAATCACCCCGGCGAAGAGCTACCACCCTCTGCACGTACTGTTACGGAACCTTCCCAAATCAACGCTAGAACAGTAGGTAATTTGCCGATGGAACCTCATCGATGTCACTGGTGCTATAAGCAATACGCTGCGCGTAATCGGCTCGTCGCTCATCATCGCAAGGCTCATCCTGATCTGGAGTTCATTCCTAGCACCGTGCTTCATTCGTCGCAATCACATGACTATATGGAAACTACAACAACTACCCTAACATCTGCTCCCGCGCCTCATCCTACCTTGGAACCACCCATGGATGTTTATCGACCACCTTGTTCGCCGGAAAACAAGCTTCTAAAGCTATCATCAGCGGCACTAGAACTATCATCCATTGAAGATAGGAAATTCTTTGATCTTCTCAATGAAAGATCACAGAGTTCGTTACAGGAACAGACATCAATTCCAGAAGGTCATGATCATCATAACTTGAATTTAGATGATAATGGAAACGCATTTTCTAAGGTCGATGTTAATTTCAAAGTGGTTGAAAGTGAATTCGGAGAGAGTTCATCGAATGGAGAACTGAATCGTTTACCACAGTTGTTTGAAGAGTCCATAGCTTGTATATAA
- Protein Sequence
- MEMELDPTDAGHDDKYYAYNRISAYDPNMCSTARFSPPYNNEQVTETQEGDGYENVILIPCTTTENETQCIERSTISTSEICSTYTVPVSARQYANQFEPPHQGFSSTQNNARESQVKNYQSEPLEPQITQIVLRQSPNGTLYHNYYVTSNVKVELMSSSGDNTFRENFVAVKGSERETQQEYAYGTKIAPNGELIGHLSDANFVQLGHGLIAEQSQEEFLSATYNAIPPSNTAITLHDKDPQRLLLESTMSPLLAAVNDITQRDAELQSYLNQSLGKETELGVFNRNTGFREQRDDYVQTNQSEQVGTNDASSARNSLQVENDEEDFLLVTDKPVESRARASLPTNYLYFGNSPDNSNGDISVFAKREIPARTKFGPFEGELRLSSDVISDVLLIQASNTYPLLLINDTHILDVSNENTCNWMRFVRLAKNYTEQNLLLFEESGKLYFRSCQVIHAKQEIKVGYSESYAKHYDLKTISPTESELREIFNRDHPWPCFECDERFSSSKDLQNHLSIHDIDDELVKPKISRRKKKIRNKHLVDIRKNSIRCLYCNKVFMTNSSLKKHISGHLTGRRTVSNRNCYPYKIFRCETCYKKFATDDKLKAHRLVHIKNDSKPFKCSHCNRCCSTPTALTAHLTSHSLRYFSCVFCAEKFTNVSEFRNHIVTHSVNGTYSCQWCKKKYSEYHLVRKHVRIFHQSFKYPCNECGRKFPNLTFLKRHKLCHSEKFEYLCSQCGKQFKRKDKLREHIQRIHSEKRKHRITKRISVTTSPERSPDQESSEHNPTCYEWNSKRINQREQDTIQAKPLEDYRNYMYKCDDCMLGFKRRGMLVNHMVKRHPNVSIESIPELNLPILKPQSLFFCQYCSKVYKSNAKRKLHILKNHPGEELPPSARTVTEPSQINARTVGNLPMEPHRCHWCYKQYAARNRLVAHHRKAHPDLEFIPSTVLHSSQSHDYMETTTTTLTSAPAPHPTLEPPMDVYRPPCSPENKLLKLSSAALELSSIEDRKFFDLLNERSQSSLQEQTSIPEGHDHHNLNLDDNGNAFSKVDVNFKVVESEFGESSSNGELNRLPQLFEESIACI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -