Hill006959.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- -
- Assembly
- GCA_905115235.1
- Location
- NC:7280885-7297545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.081 4.4 7.6 0.1 2 23 61 83 60 83 0.94 2 21 0.77 42 4.5 0.9 3 23 186 206 184 206 0.95 3 21 1.5 83 3.6 6.0 1 23 340 362 340 362 0.94 4 21 0.00032 0.018 15.1 2.8 1 23 369 391 369 391 0.97 5 21 1e-05 0.00056 19.8 1.8 1 21 397 417 397 418 0.94 6 21 0.42 23 5.3 1.2 5 23 571 589 568 589 0.94 7 21 0.48 26 5.1 1.2 2 23 604 626 603 626 0.95 8 21 0.37 20 5.5 4.3 2 23 642 663 641 663 0.96 9 21 0.00046 0.025 14.6 0.7 3 23 672 692 670 692 0.96 10 21 2.4e-06 0.00013 21.8 1.9 1 23 698 721 698 721 0.95 11 21 0.15 8 6.7 1.9 5 23 751 769 748 769 0.90 12 21 0.0093 0.51 10.5 0.2 1 23 780 803 780 803 0.96 13 21 0.3 16 5.8 3.5 2 23 819 840 818 840 0.96 14 21 7e-05 0.0038 17.2 0.4 1 23 847 869 847 869 0.97 15 21 0.0006 0.033 14.3 5.7 1 23 875 898 875 898 0.96 16 21 1.1 59 4.0 3.5 3 23 940 960 938 960 0.89 17 21 0.19 10 6.4 0.1 2 23 972 994 971 994 0.93 18 21 2.6 1.4e+02 2.8 3.4 2 23 1010 1031 1009 1031 0.96 19 21 1e-05 0.00057 19.8 0.5 1 23 1038 1060 1038 1060 0.98 20 21 7.4e-06 0.00041 20.3 2.6 1 23 1066 1089 1066 1089 0.97 21 21 2.7 1.5e+02 2.8 0.4 5 23 1134 1152 1132 1152 0.92
Sequence Information
- Coding Sequence
- ATGGATTTAATATCCTTGCTAAATTCGGGGCACCATTTAGAGCTTAAATCAGAGGAAGAGGTTGTAAATGAACTCCAAGAAAACCATGATATTGTCGATAATCATTCAGATCCCTTGAGCCTTGAGCAAAAGGTGAAGTGTGGCCGTGTCCTGATATCAGCTGATGGAGCATATAGCGTAGAGTGCGATGCTTGCAATGACCGCTTCGACGGAATGGATTCACTTAGAACTCATATGAAGACTGCCCATTCGGACTATGGCATACGGAAAAATGGCTGGATTAATGTTGCTGTCACGGAGGGGCTAACTTTTAAAACAGAGGAAAATGATGATCAAGCAGCTGATACAATAGATAGAATCGCACCGGAGAAAACTGTGTGTAGGCTTTCAGAAAATTCCAATTCAAAAAAACTCCTCACCAATATCTCGAAAAATATTACCACAAACAAAAATCGAGAGGAAGTGAAAATTCCACGCTACAGAATCTGTTCGGACAATCCAAGGAAACCTGTGAAAATTACAGCCGAGCCTATTTATGATGGAAAACGACTCTTTTGTGTCACATGCGATCGTCAATTAGCTTCCAGACTGGCCTTCACGCGACATAAGAATTATCATAAGGAGCGACTTCGTAAACAGGGAATAACTCATTTGAATCAAGGCGGCCAGGAAGATGCTTCAAATGAAACTACAGTCAAGGATGAGCTTGATATTGGCGACTACGAAATACAGAGTTCAGTTTACGATGGAGAAAGCAAGGAAAAATTATATCATGATGGGAACCGAATGAAAAATTGTAATCCTTCATGGGACAACAGTGTGTTAACTATAACCGATGTGACGAAGGAAAGCACAAACGTGGTAATTGGTAAATCAGTATTCGCTAACCCAGATGAGGGAACCCTATCCAAAGACAGCAATCGACAGAATGAAACAGAATCAGAGCAAAGGCTGAATCTGGATACCAAGTTCAACAACTCAAAGAGTCGAGACTCGTTTAAAGGCGAACTGATGGACTTCCAGTGCCGATTTTGTAATAAGCACTTTGAAAACCTAACAGAACGGTGCCTGCATGAGGAAAGCCACGTCAACGAAAAGGCACCTTATCGGTGTTCAATATGCTCGAAATCATTTACCAAGAACTTCAATCGCAAAAACCACGAACTCATTCATAAAGGAGATCGTCCATTTCACTGTTTAGATTGTGGTAAAACCTTTTCAACTGAGTATTATCTTAAACGTCATGTTCAACGTTCAATGGCGAAAGGATGCGAACCAGAATCGTATTCGTCAGGAACTAGCTGCAAAAGGATGAAGCTCAAAGCTAACTTATCTGTTGGTGCCGATGCTCAATCACCTAGCCAGAGAGAAGTGGCAATTGCTTCGTCTGTTCAGGTAGAAAGCGCTACCAGAAATGAAAAAACATCCTTTTGTGAAGAGAGTAACTTACAAAAAGAAGGAATAGAGGAGGGACAGCGTAAACACCGGACCGTGTTTACATTGGAACCCAAGTTCGACGAGGAAAGAAATTTTTGTATAACATGCGATCTTCaactgggttctcagcaagcaTTCATAAATCACAAGAAGAAACATAGATCGAGTATTCGAAGGTGGAAGACCCGAAACGGGTTGAGATTGCGCCGGAAACATGGCAAAACTGTGTTTTCTGAAAATCCCGATTTCGATGATGAGAAACAATTTTGTATTACATGTAATCGTGAGTTCCCCACTACCATCAGCTTCAAGTATCATAAAAGGATCCATAGAATGAAGATTCATGAAAAGCGGGGTAGAACTAGAACCTTATCTTGTGAACTATGCTCCGAACGTTACCATTCAGATTTTACTTTAAGGGAGCATATTGTAACACGTCATGGAGATGAGATTCCAGCTTCCCTTAAAGACGATCCAACTTACCTAAAGTGCCGCTTTTGTCATAAGCAATTTCCAAAACCAACAGAACGTTTCCAACATGAGAAAAGCCACGCTAACGAGCGAAAAAAATTTTGGTGTACATTATGCCCGAAATCTTTCACCAGAAGTTCAGACCGCAAAGTTCATGAATCCATTCATAGGGGAGAGCGACCATATCGTTGTGAACAGTGTCCTAAATCGTTTAGGAATAGAAATAATTTTACCCGTCACGTTAAAGATGTTCATGGTGGCGTTAATGGGAACATAAAGCAGACCAAAATGGTGGTGTTTTCCGAAAACCCCGAATTCGACGACGAGAAAAACTTTTGCATCACATGCAATCGTGAATTTGCCTCGAGGAGCAGCTACAACAAACATAAATTTTTACACAGGAATTTGATTCATCCAAAACATCCGACATTTTTCTGTGAATTGTGTCCTGGGAAATTTAAGTCAGACTCTGGATTAAGGGATCATATTGTGACGAATCATGGTGATGAGATTCCAAAGTCTCTACAAGACGATCCAATATACCTAAAATGCCGATTTTGTCATAAGGAATTCGCAAAACCAACAGAACGTTACCAACACGAGAAAAGTCACTCTAAAGAGAAGAAGCCTTATCAATGTCCATTATGCCCAAAATCTTTCGCCAAAAATTCAGAACGTAAAAGTCACGAATCTATTCATAGAGAGGATCTACCGTATCGTTGTGAACAATGTTTTAAGTCATTCAGATTTAAGACAAGCTTTCGTCGTCACGTTAAATATAACCATCTTCGTAAAAAACCGGCAAATGTAGTAGCTGTTGAAGTAGAGGGTACTATCAAAAACGAGGAAATGGAACCACCTAAAACAGTGTTTTCGGAAAACCCCGATTTCGATGACAAGAAACACTTTTGCATCACATGCAATCGTGAGTTTTCCTCGATTACCAGTTTCAACAAACATAAATTGTTGCATAGGAGGCTAATTCGTGCAAAGCAACTGCCAGTTTCATGTGAATTGTGCCTTGAAAGGTTTAGATCAGACTTTGGGTTAAGAGATCATATTGTCGTACAACATGGAGATGAGATTCCAAAGTCTTTAGAAGACGATCCAACGTACCTAAAGTGCCGCTTTTGTCATATGCAATTTGCAAAACCAACAGAACGTTACCAACATGAGAAAAGTCACCCCAAAGAGAGGAAGCCATATCGGTGTCCATTATGCCCGAAATCTTTTACCAGAAATTCAGAACGTATAATTCACGAATCTACTCATAGAGAAGATCAACCATATCGTTGTGAACAATGTCCTCAATCATTCAGGAATCAGACATATCTTAGACGCCACGTTAAAAATAAACATGTTGGCATAAAACCGACAAAAATGGCACCGGTTCAGGTAGAGGACACttccaaaaatgagaaaatgagacGTATCCGCAAAATTGTGTTTTCCGAAAACCCCAATTTCGATGACGAGAAAAATCTTTGTATCACGTGCAATCTTGATTTCGCCTCCAGCATCAGTCTTAGTACTCATAAGTTACTGCATCAAAGTATGATCCTGAGAAAACAAGCCACATTGGGAGAACATGTTGAAATCTGTCATGGAGAAGAAGTTGGAAAACCCCAGCAAGGGGATCCAGTGAACTCTCAAGGCTAA
- Protein Sequence
- MDLISLLNSGHHLELKSEEEVVNELQENHDIVDNHSDPLSLEQKVKCGRVLISADGAYSVECDACNDRFDGMDSLRTHMKTAHSDYGIRKNGWINVAVTEGLTFKTEENDDQAADTIDRIAPEKTVCRLSENSNSKKLLTNISKNITTNKNREEVKIPRYRICSDNPRKPVKITAEPIYDGKRLFCVTCDRQLASRLAFTRHKNYHKERLRKQGITHLNQGGQEDASNETTVKDELDIGDYEIQSSVYDGESKEKLYHDGNRMKNCNPSWDNSVLTITDVTKESTNVVIGKSVFANPDEGTLSKDSNRQNETESEQRLNLDTKFNNSKSRDSFKGELMDFQCRFCNKHFENLTERCLHEESHVNEKAPYRCSICSKSFTKNFNRKNHELIHKGDRPFHCLDCGKTFSTEYYLKRHVQRSMAKGCEPESYSSGTSCKRMKLKANLSVGADAQSPSQREVAIASSVQVESATRNEKTSFCEESNLQKEGIEEGQRKHRTVFTLEPKFDEERNFCITCDLQLGSQQAFINHKKKHRSSIRRWKTRNGLRLRRKHGKTVFSENPDFDDEKQFCITCNREFPTTISFKYHKRIHRMKIHEKRGRTRTLSCELCSERYHSDFTLREHIVTRHGDEIPASLKDDPTYLKCRFCHKQFPKPTERFQHEKSHANERKKFWCTLCPKSFTRSSDRKVHESIHRGERPYRCEQCPKSFRNRNNFTRHVKDVHGGVNGNIKQTKMVVFSENPEFDDEKNFCITCNREFASRSSYNKHKFLHRNLIHPKHPTFFCELCPGKFKSDSGLRDHIVTNHGDEIPKSLQDDPIYLKCRFCHKEFAKPTERYQHEKSHSKEKKPYQCPLCPKSFAKNSERKSHESIHREDLPYRCEQCFKSFRFKTSFRRHVKYNHLRKKPANVVAVEVEGTIKNEEMEPPKTVFSENPDFDDKKHFCITCNREFSSITSFNKHKLLHRRLIRAKQLPVSCELCLERFRSDFGLRDHIVVQHGDEIPKSLEDDPTYLKCRFCHMQFAKPTERYQHEKSHPKERKPYRCPLCPKSFTRNSERIIHESTHREDQPYRCEQCPQSFRNQTYLRRHVKNKHVGIKPTKMAPVQVEDTSKNEKMRRIRKIVFSENPNFDDEKNLCITCNLDFASSISLSTHKLLHQSMILRKQATLGEHVEICHGEEVGKPQQGDPVNSQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -