Hill002918.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- -
- Assembly
- GCA_905115235.1
- Location
- NC:212792054-212812144[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.9e-05 0.0027 17.7 0.3 1 22 220 241 220 243 0.91 2 10 3.1 1.7e+02 2.6 0.3 3 12 249 258 248 267 0.75 3 10 7.4e-06 0.0004 20.3 2.7 1 23 273 296 273 296 0.97 4 10 0.024 1.3 9.2 2.1 2 23 301 322 300 322 0.93 5 10 0.00017 0.0095 16.0 0.5 1 23 328 350 328 350 0.98 6 10 0.00011 0.0058 16.6 1.4 1 23 356 379 356 379 0.90 7 10 0.0002 0.011 15.7 3.6 1 23 386 408 386 408 0.95 8 10 2e-05 0.0011 18.9 0.9 2 23 415 436 414 436 0.97 9 10 1.5e-05 0.0008 19.3 1.6 2 23 443 464 442 464 0.97 10 10 0.00043 0.023 14.7 3.5 1 23 470 493 470 493 0.97
Sequence Information
- Coding Sequence
- ATGGATCTCGCTAATATTTGTCGCGCGTGCCTTTATGCTGATCAAACGTTGTTTTCGGTGTTCGACCCCGTGGTCTCCGAAGTGGATTCCGGCCTTGTCTCAATTGGGATTACAGCTGCTGAGATGTTAGGAGCATTTACTTCAGTTATGATTGTATCCAACGATGACTTACCTACAAAGATTTGTACTGCGTGTCTTGATCAAATCCATCGTGCCTACACGTTTAAACTGAAGTGCGAGAGCTCCCAGACAGCCCTTAAAAGTCTGATAGAGGAATTCACTGCCAAACTTAACACTGACTCATCGCGGGAATCATCAACAACTCCATCAGAGCCTACAAATGACCAACAGCCATCTCAAATCGATCCACCAGATACGACCACTTCGAACACCGAAGTCAGCGAAATCCTCAACTTCTCTGACACAAGTTTAGACGATCTAAATATACCATCGGTTACATCCCTTATAAATGAAGACCAAAACATCCCTTTGGAGGAACTATCGGGTCAGGACGTACAAATGCTGAACTTGAATTTAAATTTGGACAGTCTCAATGATATAACGAATGATATCCAAACTTTTGGTAATATTATTATTGAATATGGAGATCCTCTGGCCGAGCCTAAGGATAATTCAGAAAAATGGATTGAAAATTGTTACGAGTGCCCAGGGTGTCACAAGGAATTCCGAAAAGTGGGGCTCCTGAGGAGTCATATTGTTGATGTGCATATGGAGGGGAAGCTATGCAAAATATGTAATGAAGAATACAAAACAACGATATGGAAACACATCTCAGAGCACATGCCAGCGAAAGCCTTCCCATGTACCGATTGCGAAAAGTCCTTCCATTCCCAATTCAATCTTCAAATGCATCGAAAGATGGCCCATGATGACTTCCTTACATGCGAATATTGTTCAATGCGTTTTCGGAATATGCAGAAGTTCCGCGACCACGTCTTCCAGCACACCGGCAAGCATGACTTCCAATGCGATATCTGTTTGAAGGTCCTGAAAAGAAAGTCAGCTCTGGTATTGCACAAGCAAAACCATGCAGGGGAGAGACCATTCAAATGCGATCACTGTCCCAAAACTTTTGGCTACAAAGGGAACTTGAAATTCCACATGGTGGCCGCCCATGGTGGGGAGAAACTACCCCATACTTGTGATCTATGCTCAAAACGGTTTAAAAATAGGCCACAACTGATAAAGCACAGGTTCGAGCATACTGGGAGCACGGAGCTGAAATGTGATGTTTGTTCAGAGGTTTTTGAAACGAAGTATAAGTTGGAGTTACACAGGCGGAAGCATACCGGGGAGAAGCCCCTGAAATGTGAGGTATGCGGCCGGGGATTTAGGCTGAAGTGCAATCTGAAGGAGCATATGGGAACGCATAGCGAAGAGAGACCCTTCCAATGTGAACTGTGTCCCTGTCGGTATAAGAGGACTTATTTATTGACGTTACATATTAGAAATAGACATCCTGATTATGCGAAGAAGACTAAACTTGCCCCTTTATGA
- Protein Sequence
- MDLANICRACLYADQTLFSVFDPVVSEVDSGLVSIGITAAEMLGAFTSVMIVSNDDLPTKICTACLDQIHRAYTFKLKCESSQTALKSLIEEFTAKLNTDSSRESSTTPSEPTNDQQPSQIDPPDTTTSNTEVSEILNFSDTSLDDLNIPSVTSLINEDQNIPLEELSGQDVQMLNLNLNLDSLNDITNDIQTFGNIIIEYGDPLAEPKDNSEKWIENCYECPGCHKEFRKVGLLRSHIVDVHMEGKLCKICNEEYKTTIWKHISEHMPAKAFPCTDCEKSFHSQFNLQMHRKMAHDDFLTCEYCSMRFRNMQKFRDHVFQHTGKHDFQCDICLKVLKRKSALVLHKQNHAGERPFKCDHCPKTFGYKGNLKFHMVAAHGGEKLPHTCDLCSKRFKNRPQLIKHRFEHTGSTELKCDVCSEVFETKYKLELHRRKHTGEKPLKCEVCGRGFRLKCNLKEHMGTHSEERPFQCELCPCRYKRTYLLTLHIRNRHPDYAKKTKLAPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322840;
- 90% Identity
- -
- 80% Identity
- -