Hill011263.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- -
- Assembly
- GCA_905115235.1
- Location
- NC:21476403-21478058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 1.1e+02 3.2 0.2 2 23 39 61 38 61 0.88 2 12 0.15 8.3 6.7 2.6 2 23 143 165 142 165 0.93 3 12 2.6e-05 0.0014 18.6 0.1 2 23 169 190 168 190 0.96 4 12 0.064 3.5 7.9 1.1 3 23 198 219 196 219 0.92 5 12 0.002 0.11 12.6 0.9 2 23 226 247 226 247 0.97 6 12 0.0061 0.33 11.1 1.2 2 21 254 273 253 274 0.91 7 12 0.00034 0.019 15.0 3.7 1 23 307 329 307 329 0.98 8 12 0.00059 0.032 14.3 2.5 2 23 336 357 335 357 0.96 9 12 3e-05 0.0016 18.4 1.0 1 23 363 385 363 385 0.98 10 12 6.4e-06 0.00035 20.5 0.2 1 23 394 417 394 417 0.97 11 12 2.9e-05 0.0016 18.4 0.8 1 23 422 444 422 444 0.96 12 12 4.3e-05 0.0023 17.9 2.2 2 23 451 472 450 472 0.97
Sequence Information
- Coding Sequence
- ATGGAATACGATGGAGAACAGACTCAGGGCTGGTCTACAGAGTCGGTCGACATCAAAGTGAAACCAGTGAAGTGTGGCGAAGTATTCACTGTGGACCATCAAAATTACATTCTGATCTGCAGCCTTTGCGAAGAACCCTTCCAGGATACGTTGCAATTTGGTAGTCACTATCAAGAGAAGCATGTTCCTCAGGAGCTAGAATCGAATTACCCCCCAACTTTGGATAGTAAGACTGAAGAAGACCAATctgaattaaaagaaaacacGACCCTGGACTTTACAATCAAGGAGTGCAGTATCAAAGAAGAATACGTCGAAGAAACCCACGATGAAGTTGCTACCACCAGCAACATAGCCTGCAACCAAGAGGAAGATGTATCATACGAGAAACTATATAAATTGGTAAAGAAAAGCGACGTGAATTTATGTTGTGACCTATGTGACCATCAAACCCCCGATGAAAAGTCGCTTCGAAGTCATCTAACTATTAGGCACAATCAAGTCACATGCGATTACTGTGATGAAATGTTTGCCAGCCAGGAAGAGCTCGAAGAGCACACCAGCAGCCACGATAAGGACCAGCCATATGGGTGCACCTATTGCCTAAAATCATACCGCAGTAAACGAGGCAGACAATCGCATGTCAGCCTTTCGCACAAGAATGAACAGCATCCAAAGTGTGCAGAATGCGGAAAGTCCTTCCTTACAAAGGGAAGACTTCAGATTCACTCACAGAAACATTCGACGCCTGAACTGCTCACCTGCGAGATCTGCCGTAAACATTTTACAGACGCAAGCGAAAAATATGACCATATATGCATCGATACAGACGAAAAACCATTTAAATTCCTAGAGACCAGCCAACCTTGCATTGCAGAAGTTTCAACGAATTCAAGCCAGCACGACGAACAGGACAGATTTCAGTGTGTCGTTTGTGAGAAGAAATTTCGTTCCAAATGCAAGTTGGTACTCCATTTGACCACGCATTATGCAGGAAAACAGCTCGAATGTCCCGATTGTAGCCAGAAATTCTATCGCTGCAAAGATTTCCAAATACATTACAAAGCCCACTTGAGGAAGAAGCAATTCGAATGTGCGTTTTGTGCCAGGATATTCAAACATCCCGGGGCCCTGACAAATCACCAGAAAACACACACCATGCCCGCTAGTGAGGAACTATTTCCATGTGAATTGTGCGGCAAAAGtttcaatatcagaaatagtCTTGTGGTGCATATTAGACGGAATCATTCTAAAAAGGATTACGAATGTACGGTTTGCGGGAATACTTTTTACACAAGTTACTCACTGAAAATACATTCAGTGACGCATTTCACCGACAGACCGCTGCAATGTCCGGATTGCGACCATAAATTTCCAACTTTGAATAGTCTAAGGATGCATTTTAGGAAGCATTTGAACATGGAGAGGCATACCAAAAGTGAAGTTTGTTAG
- Protein Sequence
- MEYDGEQTQGWSTESVDIKVKPVKCGEVFTVDHQNYILICSLCEEPFQDTLQFGSHYQEKHVPQELESNYPPTLDSKTEEDQSELKENTTLDFTIKECSIKEEYVEETHDEVATTSNIACNQEEDVSYEKLYKLVKKSDVNLCCDLCDHQTPDEKSLRSHLTIRHNQVTCDYCDEMFASQEELEEHTSSHDKDQPYGCTYCLKSYRSKRGRQSHVSLSHKNEQHPKCAECGKSFLTKGRLQIHSQKHSTPELLTCEICRKHFTDASEKYDHICIDTDEKPFKFLETSQPCIAEVSTNSSQHDEQDRFQCVVCEKKFRSKCKLVLHLTTHYAGKQLECPDCSQKFYRCKDFQIHYKAHLRKKQFECAFCARIFKHPGALTNHQKTHTMPASEELFPCELCGKSFNIRNSLVVHIRRNHSKKDYECTVCGNTFYTSYSLKIHSVTHFTDRPLQCPDCDHKFPTLNSLRMHFRKHLNMERHTKSEVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -