Hill002559.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- -
- Assembly
- GCA_905115235.1
- Location
- NC:208323742-208334051[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.16 8.9 6.6 0.1 1 23 240 263 240 263 0.96 2 17 0.0053 0.29 11.3 0.3 1 23 308 331 308 331 0.94 3 17 0.00049 0.027 14.5 0.2 1 23 368 390 368 390 0.98 4 17 0.0039 0.21 11.7 0.5 1 23 396 419 396 419 0.95 5 17 0.0071 0.39 10.9 0.0 1 23 430 452 430 452 0.98 6 17 0.14 7.5 6.9 7.9 1 23 458 481 458 481 0.96 7 17 0.00034 0.018 15.1 1.9 1 23 506 528 506 528 0.98 8 17 0.0038 0.21 11.8 1.2 1 23 534 557 534 557 0.97 9 17 1.4e-05 0.00079 19.4 2.3 1 23 568 590 568 590 0.99 10 17 0.1 5.7 7.2 3.7 1 23 596 618 596 618 0.97 11 17 0.003 0.16 12.1 2.8 1 23 624 647 624 647 0.94 12 17 3e-06 0.00016 21.5 1.0 1 23 657 679 657 679 0.99 13 17 0.0012 0.065 13.3 3.4 1 23 685 708 685 708 0.96 14 17 2.8e-05 0.0015 18.5 4.0 1 23 715 737 715 737 0.98 15 17 0.00028 0.015 15.3 0.4 1 23 743 766 743 766 0.96 16 17 0.0096 0.52 10.5 5.2 1 23 776 798 776 798 0.99 17 17 5.5e-05 0.003 17.5 4.6 1 23 804 827 804 827 0.97
Sequence Information
- Coding Sequence
- ATGTCGCCGGAACAAATTTGTCGAACGTGTTTAGGCTCCACCGGTATCCTGCATAATCTTTTTGGTCCAGATAGAATTCAATTAGAGCGGGACAAAGCCTCGGCGGCAGATTTCATAGGATTGTTATTGAATACGGCGATAGAGGAAGATGATGGCTTATCCAGTAAAATTTGTCAAATTTGCTACTTCGAACTGCAACGAATATATTTGTTCAAGACCAAGTGTGAATATTCGCAGACAGTCCTCATGCAACTAAGAAACGTTAAAATCAAAATACGAAAGTTAAAATCGGATAAAAGCAACGAAATTATTAAAGACAAGCCAACGGTAGTTAATGGTCTCAGTCATGCCAAGTACATGACTACCATTGAGCATGCAACCAATTCAGCGGAATTCAATGCAATCGCAGACAATGCAGAACCGTCGAACCTTTCGACGAAGAGCAATCCTGTGTCAACAAATTACGTAGAATTCATCGACGATCCATTGAATTTGATACAGTTCGAACAGCTGAGTGGATCACATGGAGACGCAACGGTTGATATGGACTTGGATAATGTTATTATTAAGGAGGAACCTTCCGACCTATGTGAGGCTATCGAAGAGGATGTATTCAATGATCCGGATAACAACGCAGCGAACAGTTTACCGGATGTTAGAGGCAACCAAATTTTGGTCGCTGAACATGAAGTGAATCAGGCGAGTGAAGATGAGAATTTTGAGTGCCCAGCGTGTCCCTATGTGCACGTCTCCGCGGAGGGGTTGGAGAAACATTTGATTAAGAATCATATAattggaaatatgtgtacgatatGTAATACGGCTATTATCGGCAGCCAAAGGCAACACTTCGCAACTCACATGGGCTCGCAATTGGAGTACAATCAAATCATAGGAGAACCCGCTCTGACAGGATACGACTTTCAGTGTCCATTTTGCACTAAACGCTTCAAGCTACAAATTGATGTAGATGAACACATTGCGAAGGATCATATAGCTCGGaactcaaaaattgaaaagctcACTGTTAATGGTTTGAATAAAGGCGTAAGTGATGATCTGTTCGACGAGATTATCGAGGAAACGTTCGAAGATGACATTTTCGAATGTTCGATATGTTTCCAACCTTTTAGTGAAGCAAAAGAACTTGAAGAACACAAAAAGATCCATGTCCCGGAAGTTTTATTCAAATGTGAATTCTGTGCGAAAACATTTTTAAGTCAGGATGATTTAAATCAACACGCAGAAAGCCTACATCCTGTCCAAAATATCAACGGGCAACAGGTCTTCAAATGTAATCCATGCGCCCAGGCTTTCAATGAAAAGTCAGCTTTGATAGCTCATTTGGAAATGCATGAAATGGAGAAACCGTTTAAGTGTGATCAATGTGCACAAACTTTTCGCTTCAAACATAATTTGAATTGTCATATTCGTTTCAAACATTGCACCGATTGCAAGGGTATGAAGAATAATGACTGCAAAAGATGTTTAGTAAAGCAGAATGAGAAGCAAGGCTACGAATGTGATATATGCCACAAAGTATTAAGCAACAAATCAAGCATGCCTCGACATAGAAAAATGCACATGGAAGGGAAACCTTACAAGTGTGAGCTATGCTCGCAAAGTTTCAATTACAAGCAAATCTTGAATCTGCATATACGCGAGAGACATGGGGAAAAGAACATAAAATCGAATCCTGAATTTCAGTGTAAAACATGTTTACAAACGTTTGAACGTAAAGTGGACTTGACGCAACATATGAAATCACATGAACCCAATAAATTGCACCAGTGTCCACATTGTCTAAAGAATTTCGAGCTTTATACAGTGTTCATTCGGCATGTAAGCACCCATTCGGGAGGAGAAGGCTTCAAATGTGTATTATGTTCGGAGAAATTTACATCTGAACGTCATTTCCGAACTCATATCGCAGAAAAACACGTTGATGGAAGGGAAGAGACCGGATGTTACAAGTGTGAGGATTGTGGTAAAATTTTCGCTGTTAGAAGTCATTACGATGAGCATGTTCGAACACATACAAAGGAGACCCCCTACCAATGTGAAACTTGTAAGCAATCATTTCGGTTCATTCAGAGTCTCAACAGACACAAAAAACTATATCATACAAAAGACCTAACAAGCTATCAATGTCAACTGTGTCCTAAGAGTTTTCGTGATCGATGTGATTTGGTGAAACATTTTCGGAATCATACAGGAGAGAAACCATTTCAATGTGAAATATGCTCGGAGAAGTTCTCAGATAAATTGAAATTAGGAGCTCACATGCTTCTTAAGCATGATGCCAAGAACGTACAAAAACAATACTTCAAATGTGAGCAATGTTCTAAAGTGTTTTGGTATGAACACCACTATAACGTCCATTTGAGGAGTCATACTGGGGAGACACCGTTCCGTTGTGATATCTGCAATCACAGTTTTCGCTACAAGCAATCATTAAAACAGCACATTGAAAAGTTCCATAAGAACAATGGAGAACAACAGCGGCAAGAATCTGCTGAACAGAACGGGAATAGCTCTGAAACTAGTGTGGTCGTCAACGAGAACACTACAATTTATGGGAACAATGATGTTAACAACTTTGCATTCGGAGACTCAATTCTCAATGCTGATCAAATGATGAACGTGGACCCACCAGAGAATATGATGAGTGAATTATTTGATGATTCAAGTATTGAAGTTGCCTAA
- Protein Sequence
- MSPEQICRTCLGSTGILHNLFGPDRIQLERDKASAADFIGLLLNTAIEEDDGLSSKICQICYFELQRIYLFKTKCEYSQTVLMQLRNVKIKIRKLKSDKSNEIIKDKPTVVNGLSHAKYMTTIEHATNSAEFNAIADNAEPSNLSTKSNPVSTNYVEFIDDPLNLIQFEQLSGSHGDATVDMDLDNVIIKEEPSDLCEAIEEDVFNDPDNNAANSLPDVRGNQILVAEHEVNQASEDENFECPACPYVHVSAEGLEKHLIKNHIIGNMCTICNTAIIGSQRQHFATHMGSQLEYNQIIGEPALTGYDFQCPFCTKRFKLQIDVDEHIAKDHIARNSKIEKLTVNGLNKGVSDDLFDEIIEETFEDDIFECSICFQPFSEAKELEEHKKIHVPEVLFKCEFCAKTFLSQDDLNQHAESLHPVQNINGQQVFKCNPCAQAFNEKSALIAHLEMHEMEKPFKCDQCAQTFRFKHNLNCHIRFKHCTDCKGMKNNDCKRCLVKQNEKQGYECDICHKVLSNKSSMPRHRKMHMEGKPYKCELCSQSFNYKQILNLHIRERHGEKNIKSNPEFQCKTCLQTFERKVDLTQHMKSHEPNKLHQCPHCLKNFELYTVFIRHVSTHSGGEGFKCVLCSEKFTSERHFRTHIAEKHVDGREETGCYKCEDCGKIFAVRSHYDEHVRTHTKETPYQCETCKQSFRFIQSLNRHKKLYHTKDLTSYQCQLCPKSFRDRCDLVKHFRNHTGEKPFQCEICSEKFSDKLKLGAHMLLKHDAKNVQKQYFKCEQCSKVFWYEHHYNVHLRSHTGETPFRCDICNHSFRYKQSLKQHIEKFHKNNGEQQRQESAEQNGNSSETSVVVNENTTIYGNNDVNNFAFGDSILNADQMMNVDPPENMMSELFDDSSIEVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -