Hill002286.1
Basic Information
- Insect
- Hermetia illucens
- Gene Symbol
- -
- Assembly
- GCA_905115235.1
- Location
- NC:189777951-189794178[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00082 0.044 13.9 3.7 1 23 20 42 20 42 0.97 2 12 2.5e-06 0.00014 21.7 1.3 1 23 97 120 97 120 0.98 3 12 9.2e-06 0.0005 20.0 1.5 1 23 126 148 126 148 0.98 4 12 4.6e-06 0.00025 20.9 1.6 1 23 156 178 156 178 0.98 5 12 3.4e-05 0.0019 18.2 3.4 1 23 186 208 186 208 0.97 6 12 4.5e-07 2.4e-05 24.1 1.9 1 23 214 236 214 236 0.98 7 12 1e-05 0.00056 19.8 1.4 1 23 243 265 243 265 0.96 8 12 3.5e-06 0.00019 21.3 3.0 1 23 273 295 273 295 0.99 9 12 8.4e-06 0.00046 20.1 1.0 2 23 316 337 315 337 0.96 10 12 0.00012 0.0066 16.5 3.6 1 23 345 369 345 369 0.98 11 12 0.00012 0.0068 16.4 4.7 1 23 373 395 373 395 0.91 12 12 3.3e-07 1.8e-05 24.5 0.3 1 23 401 423 401 423 0.97
Sequence Information
- Coding Sequence
- ATGACGGAGGCTTCTACACAAATAACTTTAGACGACTTAAAAGAAACTCCTTATTCCTTCAACTGTGATGGTTGCGgcaaaaattttccaaatcttAAATGTTTTTATCAGCACCGGAAGTTGCACAGAAAACATGCCGGAGGAAGCAATCTAGAATATCATAGCTGCCCGTTGAAAAACCTAGACAAGGAAACTCAGCAGCAGCTGAACAAACTAGAACGATATCATCTCTCTACGCTCATCTTGAAGCTAGACACGAGGGCGGGAGATCAAAGTAATTCATCCGCATTTCAATGTAAGCTATGTGAAGGGGTGTTTACGACAAAATCTAGCTTGAAGCGGCACGTCCTCACAAGACACACCGGAGAAAAGGAATACCATTGCGAAATTTGCCCACGTAAATTCGCACTTGCTTACTATTTGAAATATCACATGCGAATTCATGCTACAGAAGGAGTAAAACCGTTCAAATGTGAGATATGCCCAAGATCGTTTTTCAATAAGCGTAGTGTTAAGAACCACATGGAGTCCCACACGCAGGGCGAGACTCGACCCTACAATTGTGACCAGTGTTCCAAGAATTTCAGCAACAAATACCAACTGAAGTATCATTCAAAAATACATGAACTCGGAAAACAATTCAAGTGCGATTACTGCCCGAAACGATTTACCTACAAAGGAAATTTGCAATATCACTTAGGAACTCATAAGGCGGAGGAAAACCCATACGCGTGTGATTACTGCGGCAAACGGTttacaaataaatattatatactaAAACATGTGAGCCAACATGAAAGGAGTGAATCTGAAATATACAAATGTGATAAATGTCCGAAGGTGTATAAGTACAAACATGGGCTTAAAGCGCATACCAAAGTTCATGAGGAAGAAGAGAATATGGAGTTGTCTGAGTCGGGCTCACTGCGTGCAACCAGAGTGTTAAAATGTGACAATTGCCCAAAAACTTTCATGAACAAGTACAGTTTAAAATACCATCTCGAAGTTCATATGGACGGGGTGAATCCGACCTACACTTGCACCTATGAAACATGTGACAAAAAATTCACTAGAAAATTTATCCTGAACCGACATCTTAAAACTCACGGGAAAGAATTTCAGTGTAACACCTGCGAGAAGAAGTTTTCCAATaaacaaaatctgaaaatgcattgTTTGATACATGTAGATAAGAAACCATTTCCTTGTAACGAGTGCGGTAAACAATTTGTTCGACCGGGACTTTTAAAAAAACATCTTAGTAATCACGCTAACAAAAGGGCGAAGACGATATCTAGCTAG
- Protein Sequence
- MTEASTQITLDDLKETPYSFNCDGCGKNFPNLKCFYQHRKLHRKHAGGSNLEYHSCPLKNLDKETQQQLNKLERYHLSTLILKLDTRAGDQSNSSAFQCKLCEGVFTTKSSLKRHVLTRHTGEKEYHCEICPRKFALAYYLKYHMRIHATEGVKPFKCEICPRSFFNKRSVKNHMESHTQGETRPYNCDQCSKNFSNKYQLKYHSKIHELGKQFKCDYCPKRFTYKGNLQYHLGTHKAEENPYACDYCGKRFTNKYYILKHVSQHERSESEIYKCDKCPKVYKYKHGLKAHTKVHEEEENMELSESGSLRATRVLKCDNCPKTFMNKYSLKYHLEVHMDGVNPTYTCTYETCDKKFTRKFILNRHLKTHGKEFQCNTCEKKFSNKQNLKMHCLIHVDKKPFPCNECGKQFVRPGLLKKHLSNHANKRAKTISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -