Hill013318.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hermetia illucens
Gene Symbol
RREB1
Assembly
GCA_905115235.1
Location
NC:16529643-16551926[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.4e-05 0.00077 19.4 2.3 2 23 227 248 226 248 0.97
2 16 0.0021 0.11 12.6 0.6 1 23 254 276 254 276 0.94
3 16 2.8e-07 1.5e-05 24.8 0.1 3 23 331 351 330 351 0.98
4 16 7.3e-07 4e-05 23.4 0.2 1 23 357 379 357 379 0.99
5 16 2.8e-08 1.5e-06 27.9 0.6 1 23 385 407 385 407 0.99
6 16 5.7e-06 0.00031 20.6 2.4 1 23 413 435 413 435 0.98
7 16 4.5e-06 0.00024 21.0 0.1 1 23 441 463 441 463 0.99
8 16 1.5e-06 7.9e-05 22.5 2.1 1 23 469 491 469 491 0.98
9 16 0.015 0.8 9.9 0.1 2 19 625 642 624 644 0.95
10 16 1.3 73 3.7 2.9 3 23 655 675 653 675 0.97
11 16 6.6e-07 3.6e-05 23.6 0.6 1 23 741 763 741 763 0.97
12 16 2.5e-06 0.00014 21.8 2.0 1 23 769 791 769 791 0.99
13 16 5.9e-05 0.0032 17.4 2.3 1 23 797 819 797 819 0.98
14 16 2.9e-05 0.0016 18.4 0.9 1 23 825 847 825 847 0.98
15 16 1e-06 5.5e-05 23.0 2.4 1 23 853 875 853 875 0.99
16 16 8.8e-06 0.00048 20.0 1.0 1 23 881 903 881 903 0.98

Sequence Information

Coding Sequence
ATGAGTATTTCAATAACAGAAAATGCGTGTCGTGTTTGCCTTGTCGAACAGGAGATCATGATCAATCTATTCGACACAGTTGAGGATTTCCAGAAGCAACGATTAAGTGATTTGCTGGAGAATTGCAGCGACTTGAAAatCGACCAGTCCGATAACCAGCCGAAATTAATATGCGACGAGTGCACGGGCGAGCTCCTTGTCGCGGCCAAGTTCCATGCAAAGTGCAGAAGAACGCTGGAGATCCTGTCGCAAGTGCAACAAGCCATTGAAGAGAACAAAACAACGAACGATGAGGATATTGCCGCCAACGAGGTGAACGATGTCGAGGACGCTTTACATACGCCCGTGGACGTCGACAGTATTATAATAGAAGAGCACGAGATGGAGGATGAAGGGGTCGAGGCTGATCAAAATAGTTCGCAGCAGGACAAAGAGGACCTCATGTTCGAGGAAGTGGGCTATGTGGAGGAGGATATGAACAACGATCAGATTATTCTGTATGAACCAGATGTAATTGAAGAGCATTTATCACCTAAGGAACAGGATAGCGAAGAGCATCATATTGAGCAGGATACGATGGAGTACGAGGAACAGAATGTATTTGAGAAAATCGCAGTTTTGGAAAGAAAGaaatctcTACGTACAACCGTTGCGCCCCGCCCTCTCATAATCAACTGCAAGTGTGACGTTTGCGGTGCCGGATTCACTCATGTTAATAATCTCAATCGGCACATtcaaacacacaatccggaagaAATTTTCACATGTTCCATTTGTAAATATCCATTCACAACCTATCTAGCCTTAGAAAATCACAGTTCAGAACACCAAAAGGACGCTGACATACTTGAAAGGGACTTGAGAGAGGAGAACTACGAAACCAAAGAGAATATTCTCGGAAAAGCGGAAAGCCCCCCAATTGGTAAATGCGATACTGACAAATTGGTGGCAACTGTCAGTGCTAGTGAGGAACCGCGGAGAACGAAAATTTGCGATATTTGCAATAAGCCTTTTGTCTCGAAGTCAGCGTTAGAGGCACACATAAGAACACATACTGGAGATAGGCCGTTTAAGTGCGACGTATGTCCTAAGGCATTTAAAACGCAAGGAGGCTTAGCGTTGCATTTAAGAAGGCACTTGGGAGTCCGCCCGTACGTCTGCAACGTGTGCAATAAAAGTTTCGGCGAGAGTAGCAACTTAAGAGTGCACATGCGAACACATACCGGCGAAAAACCTCATAAATGCACTATTTGCAATCGGAGTTTTGCACGTGTCTTTCTCCTCCAGATTCATCTGCGTACACACACCGGTGAGCGTCCGTATCAATGTCCGTTTTGCGATAAAGCTTTTGCACAAGGCGGCGATTTGGCATCACACAAACGTACCCACACGGGAGAAAGACCGCATGTTTGTCCATATTGCAAAAGAGGATTCATCAAAAGTAGTGGACTAACGCAGCACATGCGAAAACACGTGAATCAGGAAGCAAGGTCGGAAGATGCAGTGCACAATGATTCAGATGCGGAGGTTGTTAAGGGTAGCGGAGGCATTCGATTGTTTATAGTCGGCGAAGAGGATGCGAGTGTCATTTCCGAGAATGAAGGAAATGATGACAATCTGAAAGATATTAAAGTGGAAGATTATGTTATCGAGTTTAATGAAGACATCGAGACGTACAAAAACCAACCTCATATTCGCCGAGACCTCATATTCATGGCTAAAAAGGGCAAGATGAGGCAGTCGTTGAACGATGAGGGTGATTGCGAGAGTGGACAATCGGACGATAACATTATCGTGATCGAGGACAGCTTGGATAGTATTATAGACGTCGACCTGCTCTATGCCCACCAGGAGACCTTCTTTGGTGAGCTACGATGCGCAAAATGTGGCCAGAAGTTCGAGTCGGCGGAGCAGATGACCAACCATAATGGATCCGGCGAATGCAACGAAATCGAgtcaatatgccatgtttgcaTGAAAGTCATAAAAGGACACGACAAGTTTCTGAGTCACATAAAAACTCATGAAATTAGTGAAGACGATGAGATGGATGGAGGTGCATCTGCCGATGATGGACAACCGGAGGGTGAAAGTGCAGCGGAAGACACGGGGCAAGAAGAGATGAAGTGTCCTTTTTGTGGAGAAGGCATTGGTAACGACGGAGTAGATTTCGAGAAACATCTGGAAAAGCATGCCTTCGGTGACTCCACTGGAACCCGATATCCATGCATGGTTTGCGAGAAACCATTCAAGACACGAAGTGATCTACGTCGTCATATGGTTCGTCACACCAACATAAAACCCTTCAAATGCATGTACTGCGTCAAAACATTCGTAACGAAGAACGAGCTGCAAACCCACATTCGTTCCCACACGGGCGAACATCCGTACGAATGTGATCTGTGCTATGCAACGTTCACTACCTCGAGTTCAATGAAGAAACATCGTAACAAACATACCGGCCAAACGCGATATATCTGCTACATATGTTCGAAGAAATATTTCGATTCGTATGCGTTAAATCGTCATATTATGATGCATACGGGTGAAAGGCCGTTCCAGTGCAATATTTGCAATCGGGGCTTTTGTCAACGCGGTGATATGACAGTGCATATGAGGACCCACACGAATGAGCGCCCATTTGAGTGCCCGATATGTTTTCTAACGTTCAAACAGTCGAGCAATCGGAATGCACATGTCCGAAGGCATACGACTGACTCGAAATAG
Protein Sequence
MSISITENACRVCLVEQEIMINLFDTVEDFQKQRLSDLLENCSDLKIDQSDNQPKLICDECTGELLVAAKFHAKCRRTLEILSQVQQAIEENKTTNDEDIAANEVNDVEDALHTPVDVDSIIIEEHEMEDEGVEADQNSSQQDKEDLMFEEVGYVEEDMNNDQIILYEPDVIEEHLSPKEQDSEEHHIEQDTMEYEEQNVFEKIAVLERKKSLRTTVAPRPLIINCKCDVCGAGFTHVNNLNRHIQTHNPEEIFTCSICKYPFTTYLALENHSSEHQKDADILERDLREENYETKENILGKAESPPIGKCDTDKLVATVSASEEPRRTKICDICNKPFVSKSALEAHIRTHTGDRPFKCDVCPKAFKTQGGLALHLRRHLGVRPYVCNVCNKSFGESSNLRVHMRTHTGEKPHKCTICNRSFARVFLLQIHLRTHTGERPYQCPFCDKAFAQGGDLASHKRTHTGERPHVCPYCKRGFIKSSGLTQHMRKHVNQEARSEDAVHNDSDAEVVKGSGGIRLFIVGEEDASVISENEGNDDNLKDIKVEDYVIEFNEDIETYKNQPHIRRDLIFMAKKGKMRQSLNDEGDCESGQSDDNIIVIEDSLDSIIDVDLLYAHQETFFGELRCAKCGQKFESAEQMTNHNGSGECNEIESICHVCMKVIKGHDKFLSHIKTHEISEDDEMDGGASADDGQPEGESAAEDTGQEEMKCPFCGEGIGNDGVDFEKHLEKHAFGDSTGTRYPCMVCEKPFKTRSDLRRHMVRHTNIKPFKCMYCVKTFVTKNELQTHIRSHTGEHPYECDLCYATFTTSSSMKKHRNKHTGQTRYICYICSKKYFDSYALNRHIMMHTGERPFQCNICNRGFCQRGDMTVHMRTHTNERPFECPICFLTFKQSSNRNAHVRRHTTDSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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