Hlin047661.1
Basic Information
- Gene Symbol
- stc
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000640.1:97226-116935[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 2.8e+04 -2.8 1.6 15 19 92 96 91 96 0.81 2 12 0.15 1.8e+03 1.0 0.4 4 10 125 131 124 133 0.94 3 12 3.5e-05 0.43 12.6 15.6 1 19 138 155 138 155 0.93 4 12 4.5 5.4e+04 -3.7 0.7 6 10 181 185 181 185 0.92 5 12 7e-09 8.6e-05 24.4 15.4 1 19 191 209 191 209 0.98 6 12 0.93 1.1e+04 -1.5 0.6 12 16 224 228 224 229 0.78 7 12 1.8 2.1e+04 -2.4 2.3 6 10 235 239 234 239 0.90 8 12 2.4e-06 0.029 16.4 15.2 1 18 245 262 245 263 0.98 9 12 1.4 1.7e+04 -2.1 1.3 8 13 270 275 270 276 0.76 10 12 2.7 3.3e+04 -3.0 0.2 9 12 283 286 282 286 0.74 11 12 1.7e-05 0.21 13.6 17.6 1 19 302 319 302 319 0.93 12 12 1.8 2.2e+04 -2.5 1.3 5 10 348 353 348 354 0.91
Sequence Information
- Coding Sequence
- atgcaagagacaaagaggagtagagagataaaaggaagtacaagggacaaagaaagtgaACACAACTCTAAAGTTTGGACCTGCGAGCAGTGTTACCACATACTCCATCTTGACTGCACTATGAAGTGGGCTAAAAATTCAGGAGTAAAGTTGTTAGAAAACAGTTCAACAGATAATCAATCCTCAAATATGGATAACCAGTCCTCAAATAGAGACAACGAATCCTCAAATAGACAACAGTCTGTAAGGCATGTGAATGATTTGAGTTGGAGATGTCCAGCGTGTCAGCAAATCTACAATCATCTTCCTACAACATATTCTTGCTTTTGTGGTAAAACTCTCAATCCCAGTTGGATGAGAGGGATGTTGCCTCACAGCTGTGGGGAGACCTGTGGTAAGAAAAGGTCCTCTTGTAGCCACCTGTGTTCTTTGCAATGTCACCCTGGACCCTGTCCACCCTGCACTGCTTTTACTACTAGATATTGTGGTTGTGGCAAGACTGATAAAATAATGCAGTGTAAATCAACAGTTGATATAATTTGTTCAGCAGTTTGTGGTAAACCACTTTCTTGTGGCAGGCACCAATGTGAACAAATCTGTCACCAAGGAGAATGTGAACCATGCAAAATTACCACTCACCAGAGGTGTTGGTGCGGAAAGGCAGAGCGTGAAGGGCCTTGTGGGAGTGGTGAAAGGTATCAATGTGAAGAGACTTGTAGCCGACTGTTATCGTGTGGTGTACACGAATGTCAGAATCCATGCCATCCAAAGGAGTGTCAACCTTGTGTCAAAGACCCAGAGACTTGGAAGACGTGTCATTGTGGTCGAAAGCCTGTGGTGAGAAGTAGTTGTCATGAGGAGGTGCCGTCTTGTGGGCAGCAATGTGACAAGAACCTTGGCTTGTGTAGTCACCAGTGCCAAGAAGAATGCCACGAAGGCGGCTGTCCTCCGTGTACAGTGGAAGTGTCTTCCCCATGCTATTGTGGCTCTAACAGATCAATGACTGCCTCTTGTCATCAGATCACTTCAGAAGTATATCCTCGCTGCAAGAAAAAGTGCTCCAAGCACTTGCCTCTCTGCAGCAAAGTTACCTTACAAGTTATCAGCAGGTGCAACGGTGTTTCTTCCTCCTCTTTGCAGAATCTCCACAAAGCATCATTGATAATGTCCATTCAGGCTCCCTATGTTTCGGGAGAAAGTAACTTCCTTTCTCCTTCTTCGGGTCCTCATATGCACTTGTCCATGCGTGCTGTCCCAGTTACCCGCTGCTCAGCGAAGCCTCAGTCATTCTGCCAATAG
- Protein Sequence
- MQETKRSREIKGSTRDKESEHNSKVWTCEQCYHILHLDCTMKWAKNSGVKLLENSSTDNQSSNMDNQSSNRDNESSNRQQSVRHVNDLSWRCPACQQIYNHLPTTYSCFCGKTLNPSWMRGMLPHSCGETCGKKRSSCSHLCSLQCHPGPCPPCTAFTTRYCGCGKTDKIMQCKSTVDIICSAVCGKPLSCGRHQCEQICHQGECEPCKITTHQRCWCGKAEREGPCGSGERYQCEETCSRLLSCGVHECQNPCHPKECQPCVKDPETWKTCHCGRKPVVRSSCHEEVPSCGQQCDKNLGLCSHQCQEECHEGGCPPCTVEVSSPCYCGSNRSMTASCHQITSEVYPRCKKKCSKHLPLCSKVTLQVISRCNGVSSSSLQNLHKASLIMSIQAPYVSGESNFLSPSSGPHMHLSMRAVPVTRCSAKPQSFCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -