Hlin030318.1
Basic Information
- Gene Symbol
- mycbp2
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000146.1:1033147-1077245[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.4 5.3e+04 -3.7 7.1 14 19 154 159 153 159 0.94 2 13 0.0096 1.2e+02 4.8 17.6 3 19 197 213 185 213 0.85 3 13 0.00011 1.3 11.0 14.8 3 19 336 353 328 353 0.88 4 13 9.2e-09 0.00011 24.1 11.4 1 18 388 405 388 406 0.97 5 13 4.7 5.7e+04 -3.8 0.7 1 7 440 447 440 448 0.74 6 13 0.016 1.9e+02 4.1 4.6 9 18 476 485 474 486 0.90 7 13 3e-09 3.7e-05 25.6 13.4 1 19 495 513 495 513 0.97 8 13 0.034 4.1e+02 3.1 5.9 10 19 561 570 559 570 0.93 9 13 0.019 2.4e+02 3.8 5.7 1 12 579 589 579 591 0.94 10 13 1.8 2.2e+04 -2.4 2.5 14 18 614 618 614 619 0.85 11 13 3 3.6e+04 -3.1 7.3 1 12 655 666 645 667 0.91 12 13 0.003 37 6.4 12.2 3 18 686 701 685 702 0.95 13 13 1.5e-06 0.018 17.0 11.2 1 18 747 766 747 767 0.88
Sequence Information
- Coding Sequence
- ATGCCTCAATCTTCAAAGGTTGGGTATAATAAAATTTTATCTGGTGGTTCGAATTCAGTGAACGGAAATAACAGAATTACCACTTCAGAAGATCGGTTTAAAGCAGCCCACGAACAGTTTCAAGAATCCGTCAAAAAACATATTGAAGCCGAATACGAATCATCAGAAGAAGAAGATGAACTGGAAACACAACCCATATTGGTCCGAAATGTCGGCTTGATTACAACCAAAATGAAATTCCTTATAATTATACATGCTTCTGCGGCAATACTGAAGACCCTGACTTTCATCCGTGGATGGTACCTCATTCTTGTGGAAACACTTGCAGTCGTTCACTTCAGCCACACTGCGGTCACACCTGCCTTCTACTTTGTCACCCTGGCTCAACATTTCTTTTTCGAAAATAGCGGCCGGGGTAGCCCAATGGTTTGCTTTCTCGCCTTTGGACTGATAGATAGCCCATGTCCACCGTGTCCTAAAATGGTGACGTCTCGCTGCTACTGTGGCAGAAGTCCTTCGCAGAAAACAAGGTGCTGTCACAAGGAACGCTCCTGCGGCCAAACATGTGGCAAGAAACTACCTTGTTTGAAACACGTGTGTCGAGCTCCCTGCCACGCCCAACTCTGTCCTCCTTGCCCAGAGACTTCTTCGCTTCCTTGTCTCTGTCGTAGACATTCCAAAATAATTCCATGCTCCCAGTTGAATTGGCAGTGTGATCAGGGCAGGCATGGGCAACCTGCGGCCCGCGACGTGTTGAAATGCGGCCCGCGGAGCCTTTTAGGTTTCTTAAAAAACAAAAAAACTCAAATTAGTAAATGCCCAGCCTTCGTCTTCAAAATTCCTTTCTCAGTCGAAGGTTATTCCAAGGGGGATTATCGGGCCTGGAAAATCAATTTAACCGCGGAAATCCCACTGGGAAAAGATATTTATCTTACCCCCTTTTTAACCAGAATCTTAATCCTAGTTAATAGTCTGTCGGTGTGCGGTGAGATGTTTTCCTGTGAGCTGCATAACTGTCAAAAGCGGTGCCATGAGCCGGGCCAGTGTGGCCCTTGCCCTGGATCGCAACCCCGAAACTGTCCCTGCGGCAAGACGACAGTCCTGCTACCATGCCAGCAAGAAGTCATGCCCTGCGGCTCGACTTGTGAAAAGCTCTTGGACTGCGGCCTTCATACTTGTTCAGAGCGTTGTCACAAGGGTCCTTGCGCCAGTTGTTTGGCCGTCGTGGAAAAGGCATGCCGATGTGGGCTTAGTAAAAAAGAAATCGCTTGCCAAAAGGAATATTTGTGCGAGAACAAGTGCAAGAAGGTGAAAGATTGTGGCGTACATATGAGGTGTGAAGAGCGAAAAGCGAAGAGTCCCGCAGGAAGGCAGGGCGGCGAACTCACACTGGCTCTTCGCTCTTCACACCTCCTGATGACGACGATGTGCTGTGACGGGCAGTGCCTGCCCTGTGAGAAGCCCTGTGCCAAGACACTTCCGTGTGGTCAGCACAAGTGTGCCTCAGTGTGTCACAGAGGCCCATGTCTCCCGTGTACGGTGACCAAGACCCTGTACTGTCGATGTGCTGTCACGTCCATCGTCCTTCCCTGCAGTAACAGAAAGAAACATCCACCCAAATGCAAGCAACGTTGCAGAATCCCTCCGGATTGTGATCATCCAGTGAGGGAGGCTCACAACTGTCACTTTGGACCCTGTCCTCTCTGCAGACAGGTTTGCCGGAAGCCTCAGCCGTGCGGTCACCCTTGCCCCAGCGCTTGTCATACGACGCCCAATCATATTCTTAATCCTTCAACTAATTCCCGGGTGAAAGCGGTGCGAGAGACGCTCGAAGTAGCTGCCTGCCCTCCATGCATGGTGCAGGTGGGAGTGGTCTGCCTGGGTGGTCACGAGAGCCTCTCTTTGCCCTGTCACAGTGCTTCTCCTAGGAGCTGCGGTCGACCTTGTGGACAGCTCCTCTCCTGCACTAACCATCTCTGTGACATGGAATGTCATGACACTAAACTAAACAAATGTGAAGATTGCAATGAAGACTGCTCTGCTGAGCGAATGTGTAACCACCCATGTCTGTTTGCTTGCCACCCGGCGCCGTGCCCTCCCTGTGTGGCCAGCGTCAAGCTGACGTGCCACTGCCGCCTCTCCACCGTCCTAGTCAAGTGTTCTGAGTGGGTGGGCGCGGATGATCATACCAAAGATAAACTGCTTTGCTGTGGAGTCAACTGTCCCAAGCAGTATGAGTGTGGACATAAGTGCAACAGGATTTGCCATGCCGGGGAGTGTCCAGGTTTAAGCAACTGTAAACGTAAAGTAAAGCTTACGTGTCCTTGCAAATTGATAAAGAAAGAATTTGTTTGCTTCTCAGTCTTTGGGAAGAAGGATGTTGTGCAATGTACGGAATCCTGTAAAGAGGCCAAAATACAATCTGCCTTGAAAAAAGAAAAAGCATTGCTTGCAGAGAAGTTAGCTCAAGAAGAGAAAGAGAAAGCAGAATTTGAGGAATACGAGAAAAGGAAGAAAATAGGTAGGCGTCGACAAAGAAGGAAAACTAGTCAAACCCCTGTAGAAGACAACATGAAAAAAGTAGAATGGAAGAAAAGCAAAAAAGGAAAACCGTTGAGAAGTAAAGATGCGCGAAAACAGAAGGTTGAATCTCTTTCTGATAGTCCTCCAGAAATTGAAATTGCCGGTAATGCGTCAAGCTTTGCGGTTTATGCCACAGTAAGATTGGCGGTTTTAGAAAGGTGGATGAAAGATGCTAGTGAACTTTATCTTGTTTCAAGTGGACATGCACCCCCTTTGACATGTCATAGTTCTGATAGTGAAGAAGAAACTTCTCAAAACCAAGTGGTGGCTCCTCTCCCTCCTATTCCTAAGATTGTTGGATTTGGTTTGAGAAGTGTTTTCGAACTGATTAGAGAGAGTAGGGTTAACCATACCTCTCTATGTAATAAAGCTCTTGGAGCTCTCCTTGACGTTCTTCAGGGCCATCAACCAGAAGCTTTAAAAAACGAACCGTCCCAAGTCATAGATCCCCTGTTGGAACTGCTTTTGGACTTGTCTACATCAGACTATGACAAAAACAGCTGCTTGACGGGAGTAGCTTGTTCATGTCTGCTTGCGTTGGTGACTGCGAGGGGCGACACAGGGAAGGTGCTGGCAGCTGTCGCAGCCCTCCTCATGTGTCCCAGGGCCATATCCCAGCAAACCATTCAGATGCCCATGATTCTAGTTACATTACAGAAGTGTGTCTTGGGAGTTGTCCTTGGTAAGACTGTCGCTCCCGACTGGATCACCCATGGAGTGCCTCTTAATTCTATGCTTTACTCATTTTCTATCGACAGATGGGATTGTAGTGACAAACTAGTCGAAAAAACAGTGGCTTCTGACGGCCTGTACCTTTACATTCACACAAACAAAGGCCTGTTCAAGGTGGGCACTGGTTACTCTTCTACTGTCAGAGGATACATATATGCACACAAAAAGGATTTCTTCAATGACTCCGTTGCTTGGCTAGGATTTTGTCAGAATAAGTTGTTCATGAGGCTTAGTAATGGCGATAAATATGACCTTTACATCATTGACCGTAACTCTTTAGAAGTCAAAGAAGTTGGAACACTTGATCTGGCTGGAGTCATGTTTTCTGATGGAGAGTCTCTTGGAATCGTAACACCTACGAAAGATGATAGTTTTTCCATGCGTTCCCTAAATCCAAATCTAACACCTCTGACGTTCTTCAACGAAGTGCCTTTGAAATTGGTGCAGAAATGTTTGGTGGCCGTGGGATCTTCTAATTCAGATCAGCAGTCCAGTATTCATACAATCAGCACCGGCTCTGACGATGACATCGTGTCCATAGCTGCTGCTAAGGACTTTACTCTGATAAGGACGTCGACCGGAAAGGTGCTGTACAGTGGTAAGGGCAGTGCATTGGGAGTCAAGGGTGGAGGCCAGGGGTGGAGTGAACTAGTCATTACCAAGGCACCCAACATTGCTCAGGTTTGTGTTGGTCACGATGGCATTCATGCAGTGCTCATAGCTGAAGATGGTTCAGCGTACTTCACTGGTACAGCGCGAAGGGGAGAGGATGGTGACCATAATAAAGTCAGAAGACAGCCGAAAGCAGTTAAACCAAAGAAAATGTCAAAAGTGGAAGGGCACAAGATAATCTATGGAGCGTGTAATAACGGGACAACTGCATTAGTATCGAAAGAAGGAGAACTGTTTATGTTTGGAAAGGATACAGTTCATTGCGATCCAGCCACTGGTGTTGTGACCGACCTCAAGAATATTGTGGTAAACCAGGTTTGTCTCGGTAAGGCGCACGCTGTTGTTGTAACTAACAAAGGACATTTGTACACTTTCGGAATCAACAATAAAGGGCAATGTGGCAGAGAGTTTCCAGTTCCTATTAAAGAAGTGACGGTGATGGAAACTGGCGTGGAGGAAGAGGGAGACGATGAGGATTGGGAGGAGGCGGGAATGTGCGCCCCAGGCACGCACAAGTGGAAGCAGGACCTGTGCATGGTGTGCACCGTGTGTCGCGAGTGCACTGGCTACAGCATCAGCTGTCTCTCCAGCATGCGCCCCGACCGTCTGCCCGCCCAGGAATGCGGCTGTGGCGAAGGAGACTCGGGGTGCAGTGTGTGTGGGTGCTGTCGGATTTGCGCTCGGGAAAATCTCGACAATTCAGATATGGCTATCCTCGGACCGAGTGGTGCTTCCGACATCGCTGGCATGATGCGTCTAGATCTCATCTTTGGAGGTATACAGGGATCAAGACTACAAGACAATGTTGAACTTCGTTTGGAGGAGCGCAAGCAGAGACAACGTGCCAAACTGGCCGCCAGACAACCGTCGAAAGCTAAGAGCTCCACTCGCAAGCCCAAACAGTCCCACAGCCTGCTAGGTAAACACCGTTCTTTCGCTCCTTTTGGCTCTTACTTTCTTCATCTGATACGCTTTGTGGTTTGA
- Protein Sequence
- MPQSSKVGYNKILSGGSNSVNGNNRITTSEDRFKAAHEQFQESVKKHIEAEYESSEEEDELETQPILVRNVGLITTKMKFLIIIHASAAILKTLTFIRGWYLILVETLAVVHFSHTAVTPAFYFVTLAQHFFFENSGRGSPMVCFLAFGLIDSPCPPCPKMVTSRCYCGRSPSQKTRCCHKERSCGQTCGKKLPCLKHVCRAPCHAQLCPPCPETSSLPCLCRRHSKIIPCSQLNWQCDQGRHGQPAARDVLKCGPRSLLGFLKNKKTQISKCPAFVFKIPFSVEGYSKGDYRAWKINLTAEIPLGKDIYLTPFLTRILILVNSLSVCGEMFSCELHNCQKRCHEPGQCGPCPGSQPRNCPCGKTTVLLPCQQEVMPCGSTCEKLLDCGLHTCSERCHKGPCASCLAVVEKACRCGLSKKEIACQKEYLCENKCKKVKDCGVHMRCEERKAKSPAGRQGGELTLALRSSHLLMTTMCCDGQCLPCEKPCAKTLPCGQHKCASVCHRGPCLPCTVTKTLYCRCAVTSIVLPCSNRKKHPPKCKQRCRIPPDCDHPVREAHNCHFGPCPLCRQVCRKPQPCGHPCPSACHTTPNHILNPSTNSRVKAVRETLEVAACPPCMVQVGVVCLGGHESLSLPCHSASPRSCGRPCGQLLSCTNHLCDMECHDTKLNKCEDCNEDCSAERMCNHPCLFACHPAPCPPCVASVKLTCHCRLSTVLVKCSEWVGADDHTKDKLLCCGVNCPKQYECGHKCNRICHAGECPGLSNCKRKVKLTCPCKLIKKEFVCFSVFGKKDVVQCTESCKEAKIQSALKKEKALLAEKLAQEEKEKAEFEEYEKRKKIGRRRQRRKTSQTPVEDNMKKVEWKKSKKGKPLRSKDARKQKVESLSDSPPEIEIAGNASSFAVYATVRLAVLERWMKDASELYLVSSGHAPPLTCHSSDSEEETSQNQVVAPLPPIPKIVGFGLRSVFELIRESRVNHTSLCNKALGALLDVLQGHQPEALKNEPSQVIDPLLELLLDLSTSDYDKNSCLTGVACSCLLALVTARGDTGKVLAAVAALLMCPRAISQQTIQMPMILVTLQKCVLGVVLGKTVAPDWITHGVPLNSMLYSFSIDRWDCSDKLVEKTVASDGLYLYIHTNKGLFKVGTGYSSTVRGYIYAHKKDFFNDSVAWLGFCQNKLFMRLSNGDKYDLYIIDRNSLEVKEVGTLDLAGVMFSDGESLGIVTPTKDDSFSMRSLNPNLTPLTFFNEVPLKLVQKCLVAVGSSNSDQQSSIHTISTGSDDDIVSIAAAKDFTLIRTSTGKVLYSGKGSALGVKGGGQGWSELVITKAPNIAQVCVGHDGIHAVLIAEDGSAYFTGTARRGEDGDHNKVRRQPKAVKPKKMSKVEGHKIIYGACNNGTTALVSKEGELFMFGKDTVHCDPATGVVTDLKNIVVNQVCLGKAHAVVVTNKGHLYTFGINNKGQCGREFPVPIKEVTVMETGVEEEGDDEDWEEAGMCAPGTHKWKQDLCMVCTVCRECTGYSISCLSSMRPDRLPAQECGCGEGDSGCSVCGCCRICARENLDNSDMAILGPSGASDIAGMMRLDLIFGGIQGSRLQDNVELRLEERKQRQRAKLAARQPSKAKSSTRKPKQSHSLLGKHRSFAPFGSYFLHLIRFVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -