Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0041 50 6.0 9.3 1 11 12 22 12 23 0.94

2 12 0.11 1.3e+03 1.5 1.3 4 10 29 35 28 35 0.93

3 12 3e-10 3.6e-06 28.8 9.4 1 19 41 59 41 59 0.98

4 12 1.8 2.2e+04 -2.5 1.4 6 10 88 92 87 93 0.61

5 12 6 7.3e+04 -5.3 14.2 1 19 98 116 98 116 0.82

6 12 0.29 3.5e+03 0.1 1.1 8 13 121 126 120 127 0.83

7 12 1.3e-08 0.00015 23.6 5.9 1 18 152 169 152 170 0.93

8 12 9.2e-05 1.1 11.3 5.6 6 18 188 201 187 207 0.85

9 12 0.0001 1.2 11.2 8.5 6 18 214 231 213 232 0.83

10 12 6.8e-05 0.83 11.7 7.3 6 18 248 265 247 266 0.84

11 12 1.9e-07 0.0023 19.9 5.1 6 18 276 288 275 289 0.97

12 12 0.026 3.1e+02 3.5 0.4 6 11 304 309 303 310 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0041	50	6.0	9.3	1	11	12	22	12	23	0.94
2	12	0.11	1.3e+03	1.5	1.3	4	10	29	35	28	35	0.93
3	12	3e-10	3.6e-06	28.8	9.4	1	19	41	59	41	59	0.98
4	12	1.8	2.2e+04	-2.5	1.4	6	10	88	92	87	93	0.61
5	12	6	7.3e+04	-5.3	14.2	1	19	98	116	98	116	0.82
6	12	0.29	3.5e+03	0.1	1.1	8	13	121	126	120	127	0.83
7	12	1.3e-08	0.00015	23.6	5.9	1	18	152	169	152	170	0.93
8	12	9.2e-05	1.1	11.3	5.6	6	18	188	201	187	207	0.85
9	12	0.0001	1.2	11.2	8.5	6	18	214	231	213	232	0.83
10	12	6.8e-05	0.83	11.7	7.3	6	18	248	265	247	266	0.84
11	12	1.9e-07	0.0023	19.9	5.1	6	18	276	288	275	289	0.97
12	12	0.026	3.1e+02	3.5	0.4	6	11	304	309	303	310	0.92

Coding Sequence: ATGCTATGCCTTGTGGTTTTGCAGAAAAGACTGTGCGGCCGACACAAGTGTAACAGAGAGTGCTGTCGCTCTACTTCTGCCGAACACGAGTGCATCAACGTGTGCAACAGAAGCCTTAGCTGTGGGAGGCATCGCTGTGAGTGGCTTTGTCACGCAGGCAACTGTGCTCCCTGTTCCGTCCTAGGATTCGAAGAAGTGAGCTGCGACTGCGGCTCCAAAGTCCTGCTGCCTCCAGTGCCTTGCGGGCAGCGTCTGCCTGAATGCTCTTCCCCCTGCCCACGAAGACACCCTTGCGGTCATCAGCCGACTCACTCCTGTCACCAGCAGGCCGAGTGTCCTCCTTGTACAGTGCTTGTCAGCAGGACTTGTCATGGAGGGCATGAGACTCGCAAAGCTATCCCATGCTATGTGGCCGACTACTCCTGCGGGCTCAAATGTGCCAAGCCTCTGCCTTGCGGCCACAAGTGCATTGAGCTCTGCCACGTGGGCGAGTGCGCCACCTCGTGCACCCAGCGCTGTCAGTCTCCTCGCCCTGATACTTGGTCGGCTGCGAGTACTTGGTGCATTGAGCTCTGCCACGTGGGCGAGTGCGCCACCTCGTGCACCCAGCCCTGTCAGTCTCCTCGTCCTGACTGCGAGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACTTGGTGTTTGGAGGGATTCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACTGGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACATGGTGCATTGAGCTCTGCCACGTGGTGCGTAGTGCCGCCACTCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGCTGCGAGTACATGGTGTTTGGAGGGATTTCTGTAGTTTTTAGCCATGCTAGTGTGCGCTAA
Protein Sequence: MLCLVVLQKRLCGRHKCNRECCRSTSAEHECINVCNRSLSCGRHRCEWLCHAGNCAPCSVLGFEEVSCDCGSKVLLPPVPCGQRLPECSSPCPRRHPCGHQPTHSCHQQAECPPCTVLVSRTCHGGHETRKAIPCYVADYSCGLKCAKPLPCGHKCIELCHVGECATSCTQRCQSPRPDTWSAASTWCIELCHVGECATSCTQPCQSPRPDCECIELCHVGECPTLCTQPCQSPRPDCEYLVFGGILCIELCHVGECPTLCTQPCQSPRPDCEYWCIELCHVGECPPCAPSPVSLLALTASTWCIELCHVVRSAATPVHPALSVSSPCCEYMVFGGISVVFSHASVR

Sequence clustering based on sequence similarity using MMseqs2