Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-06 0.015 17.3 7.4 5 18 13 26 13 27 0.95

2 8 0.00012 1.4 10.9 6.0 6 18 31 44 30 50 0.85

3 8 5.6e-05 0.68 12.0 7.2 6 18 65 82 64 84 0.85

4 8 5.6e-05 0.68 12.0 7.2 6 18 99 116 98 118 0.85

5 8 9.5e-05 1.2 11.2 5.8 6 18 133 146 132 152 0.85

6 8 3.4e-06 0.041 15.9 3.0 6 17 167 178 166 178 0.97

7 8 0.17 2e+03 0.9 0.9 4 10 258 264 256 265 0.89

8 8 5.6e-05 0.68 12.0 7.2 6 18 281 298 280 300 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-06	0.015	17.3	7.4	5	18	13	26	13	27	0.95
2	8	0.00012	1.4	10.9	6.0	6	18	31	44	30	50	0.85
3	8	5.6e-05	0.68	12.0	7.2	6	18	65	82	64	84	0.85
4	8	5.6e-05	0.68	12.0	7.2	6	18	99	116	98	118	0.85
5	8	9.5e-05	1.2	11.2	5.8	6	18	133	146	132	152	0.85
6	8	3.4e-06	0.041	15.9	3.0	6	17	167	178	166	178	0.97
7	8	0.17	2e+03	0.9	0.9	4	10	258	264	256	265	0.89
8	8	5.6e-05	0.68	12.0	7.2	6	18	281	298	280	300	0.85

Coding Sequence: ATGCTAGTGTGCGCTAACACACATTGGTGTTGGTTTAGGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCTGTCACCCAGCCCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCTCCACCTCGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACATGGTGTTTGGAGGGATTCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACTTGGTGTTTGGAGGGATTCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACATGGTGTTTGGAGGGATTCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCGCCACCTCGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACATGGTGTTTGGAGGGATTCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCACCTCGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGTACTTGGTCGCTGCGAGTGCATTGAGCTCTGCCACGTGGGCGAGTGCGCCACCTCGTACACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCACCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTGCATGGTGTTTGGAGGGATTCTGTGCATTGAGCTCTGCCACGTGGGCGAGTGCCCCACCCTGTGCACCCAGCCCTGTCAGTCTCCTCGCCCTGACTGCGAGTACATGGTGTTTGGAGGGATTCTGTAG
Protein Sequence: MLVCANTHWCWFRCIELCHVGECPTCHPALCIELCHVGECSTSCTQPCQSPRPDCEYMVFGGILCIELCHVGECPTLCTQPCQSPRPDCEYLVFGGILCIELCHVGECPTLCTQPCQSPRPDCEYMVFGGILCIELCHVGECATSCTQPCQSPRPDCEYMVFGGILCIELCHVGECPPRAPSPVSLLALYLVAASALSSATWASAPPRTPSPVSLLALTASALSSATWASAPPCAPSPVSLLALTASALSSATWASAHLCTQPCQSPRPDCECMVFGGILCIELCHVGECPTLCTQPCQSPRPDCEYMVFGGIL

Sequence clustering based on sequence similarity using MMseqs2