Hlin016789.1
Basic Information
- Gene Symbol
- pnr
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000190.1:1073965-1078891[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-19 8.7e-15 56.0 5.3 1 35 174 207 174 208 0.98 2 2 2.2 2.6e+04 -3.2 0.0 8 20 264 276 262 278 0.80
Sequence Information
- Coding Sequence
- ATGGACCTACCGATTTCTTCCCGATGTATCATCGAGGGCGAGGCTGAAAAATTTTCATCTAGACTACTGGGTGAATCAGATTCTCTCCGGACATGGGGACTTTGGGGCCCCAAAGGGAGGTGTATTTGTGGGGCCCTCTCACAGAGTGTAGCTCACGTTCTAGAGGTATGCCCCAGATATGCCAGGGAGCGTTTTGAATATGAATCTAATACTGGTGAGTTCGTGGAATCTACATACAGAAACGCTTTAAAGAAGAACAGGGCTGCGTTTCTTAAATTCGTCTATGCTATAGGAAGATGCAAGAGGGTCGGAGAAGCTCGCCTCCGCGTGGTCCACCTCGGGCGTAGCTCGGAGGAGGTGACGTCTACCCTAGTAAGTAGGGTAGACTACACTCCCTACTACCTAGTAAGGGGAGTAGGGGGTAGGAGGTGCCCACCGTCCCTAGTAAGGGGGAGGGATCGTCCGCCCCTAGCAAGTGAGGTGGGAGGGGCTACTGCTTCGCGAAGAGCTGGGCTGACTTGTTCTAACTGCACGACTTCGACCACGTCCCTCTGGCGACGTAACTCAACTGGGGACCCGGTGTGTAATGCGTGCGGGCTTTACTACAAGCTACATGGGGTCAATCGACCTCACACTATGAAAAAGGACTCtattcagACGAGGAAGAGAAAACCTAAAGGAGGAAACAAGAATGATTCTAATTCAGCCTCAACTAAGATAATGAAAATTGAAACAAATGGTTTTGTAGAGAGGGTTCCAGTAAATTCCGGAGGTGGTCTTGGTGCTTATTCAACTCCTCAACTATATCCAGCTCATAACATGTCTCCCTTCTTAGAGTTCATCAAGCAAGAATCAGTCCCTTCTCTAGACACACCACACATTGTGTCTCATAACAACAACAATTCAACCAACAACAACAATAACACAACTCCAAGTAACAAACAAGAAAGGCCTTCTGTCTTGGTCTGA
- Protein Sequence
- MDLPISSRCIIEGEAEKFSSRLLGESDSLRTWGLWGPKGRCICGALSQSVAHVLEVCPRYARERFEYESNTGEFVESTYRNALKKNRAAFLKFVYAIGRCKRVGEARLRVVHLGRSSEEVTSTLVSRVDYTPYYLVRGVGGRRCPPSLVRGRDRPPLASEVGGATASRRAGLTCSNCTTSTTSLWRRNSTGDPVCNACGLYYKLHGVNRPHTMKKDSIQTRKRKPKGGNKNDSNSASTKIMKIETNGFVERVPVNSGGGLGAYSTPQLYPAHNMSPFLEFIKQESVPSLDTPHIVSHNNNNSTNNNNNTTPSNKQERPSVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -