Hlin025085.1
Basic Information
- Gene Symbol
- pnr
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000107.1:1704824-1720593[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 3.4e+03 -0.3 0.1 10 17 56 63 55 65 0.90 2 3 5.7e-15 6.9e-11 43.5 2.5 1 35 78 111 78 112 0.97 3 3 7e-19 8.5e-15 56.0 4.5 1 35 137 170 137 171 0.97
Sequence Information
- Coding Sequence
- ATGGGCAGGGCGCCTAGGTGCAAGAGAACCTCAGGAACTAGATATTTAGTGGTGTACAGCGGAGGGGAGTACAGCGGAGGGTACAAGCAGTCCCCCGGATACTGGTCCCAGGAATACGTGTACCAAACAGTCGAACAGCCCATGATTCATTCCTCATACATACAACCCCAGTGGCATCATGATCCGGAATCCTACGACGCAGGTTTGCAACTGGCGGGAGAGATCAAAGAATGTGTCAATTGCGCTGCGAATGTAACCCCTTTGTGGAGGCGAGACGGAACAGGTCACCGCCTGTGCAACGCCTGCAGTCTCTACAGTAAAGTGAATGGGGTCAACAGACCGCCGGTGAGGACGTCCACAAGCAAGAAGATACCCAACCAGGCTGGTAACAGGAGAGTGGGTGTGTCGTGTGCAAACTGTGGGACAGACAACACGACACTGTGGAGGCGGAACAATCAGGGCGAGCCTGTGTGTAACGCCTGCGGCTTATACTTCAAACTCCATCAGGTGAACAGGCCAAGCACAATGAAGAAAGAAGGGATTCAAAAGAGGAAGAGAAAGCCTAAGAATCCTTCCCAGGCTTCCAGCCCAAAGCCGGACTTGAGTAAGGATTACAAAATGAGCCTCCACGACAGACGATTGTTCTCAGAAAGCATTCTTTACGAGATTCCTCCTAATCAGCGAGTTGGAGAGAAGCTGAATGGTACTATGTACGTGGATGTTCAGAAGCCTCTGGGCGAGCCCGACCTGCTGGCGGGAGAGCCGTACTTGACGCACACGTCGCTCCTAGTTCAACCTCACAACATCAAACTAGAGTTTTCACTCTCTCCATTGCCCTCTCTCTCTCTCACTCTCTCTCTAAACCATTCATCCCGCCTTCTTTATCTCTTTCTCACCCACACCTTCGCTCTACTATCTATTTTTCAACCTTTTTTTAATCTCGCACCTCGTCACCATCTTTACTTTCACTTTATCCTCTTTCTTTGTTTTCTTTCTCTCTTCTCTCTCTTTCCCACCTTCTCTTTCTCTTCTCTTTCCTTTCTTTCATCCCCCCTCTCTCTCCCCCCTTTTTCTCTGTTTACTTTCTCTCTTCTCTCTCTCACACACTTTCTCTTTCTCCTCTCTTTCCTTCCTTTCTTCCTCTATCCTCTCACCCTCTCTCTTTCTCTGTTTTCTTCCTCTGTTTCCTTTCTCTCTTCTCTCTCTCTTTTTCTCACCTCTCTTTCATTTCTTTCTTCCCTTCTCTCTCCTCTCTCCCCTTCTCTTTCTTTGTTTCCTTTCTCTCTTCTCTCTCTCACACACTTTCTCTTTCTCCTCTCTTTCCTTTCTTTCTTCCCCTCTTCTCCCTCCTCTCTCCCCCTCCCTTTTTCTTCCTCTTCTCTCACTTTCTCTCTCTCCATCCCACTTTTCTTTACTGTACATACTCCCTCCCTCACCTTTACCCCCTCTCTCATTATTTCACTCTATTCTGACACATTCTCTCTTTTACAACTCTCTATCGTTTCCCCCCACCACCCAATGCTCTCTCTACTCTCTTAA
- Protein Sequence
- MGRAPRCKRTSGTRYLVVYSGGEYSGGYKQSPGYWSQEYVYQTVEQPMIHSSYIQPQWHHDPESYDAGLQLAGEIKECVNCAANVTPLWRRDGTGHRLCNACSLYSKVNGVNRPPVRTSTSKKIPNQAGNRRVGVSCANCGTDNTTLWRRNNQGEPVCNACGLYFKLHQVNRPSTMKKEGIQKRKRKPKNPSQASSPKPDLSKDYKMSLHDRRLFSESILYEIPPNQRVGEKLNGTMYVDVQKPLGEPDLLAGEPYLTHTSLLVQPHNIKLEFSLSPLPSLSLTLSLNHSSRLLYLFLTHTFALLSIFQPFFNLAPRHHLYFHFILFLCFLSLFSLFPTFSFSSLSFLSSPLSLPPFSLFTFSLLSLTHFLFLLSFLPFFLYPLTLSLSLFSSSVSFLSSLSLFLTSLSFLSSLLSPLSPSLSLFPFSLLSLTHFLFLLSFLSFFPSSPSSLPLPFSSSSLTFSLSIPLFFTVHTPSLTFTPSLIISLYSDTFSLLQLSIVSPHHPMLSLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -