Hlin078016.1
Basic Information
- Gene Symbol
- ZNF687
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000127.1:1472143-1477863[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 6.3e+02 3.1 2.3 1 12 280 291 280 301 0.77 2 11 0.047 22 7.7 1.6 1 22 308 331 308 334 0.92 3 11 0.12 56 6.4 0.2 1 11 388 398 388 404 0.90 4 11 0.4 1.9e+02 4.8 2.6 1 23 415 437 415 437 0.98 5 11 0.02 9.2 8.9 2.1 1 21 443 463 443 468 0.92 6 11 0.034 16 8.1 0.5 2 23 476 498 475 498 0.96 7 11 0.018 8.4 9.0 0.9 1 23 504 529 504 529 0.96 8 11 3.9 1.8e+03 1.6 0.2 1 14 732 745 732 748 0.88 9 11 3.7e-06 0.0017 20.6 0.4 1 23 804 826 804 826 0.99 10 11 0.011 5.4 9.6 0.1 1 23 832 855 832 855 0.96 11 11 0.013 6 9.5 2.6 2 23 878 899 877 899 0.98
Sequence Information
- Coding Sequence
- ATGAAATTGGTGGGTTCCCGTCCAAGGGTAGACGTCAAATTGATATACTTGAAGACTGAGGCGTTGCTAAAGGATGGTACAGAAGATGCAAAGGTCGCTCTCGCGGACGTCGCTAGTATGAGAGTCATTACTGCTTTGCACATCACGGCCCTTGCGTGCAGGCACATATCTGGTGCAACCAGGAACCACAAAACCCACTGCCTAGATCAAGTTTTTACCTCGACCTTGGGTATGCTCCTCCCTCAAAATGTAGTATCTGGTGATTCTGAGAGCTCTGATTCATATGATGATCAGTATATACATAAAGTTGGGGGAAAGGAGCAAAGCACTTTAAGGGAAGAGTGCAAGCAATCTCAGGTGAAAGAAGTACCCTCACTTAAGAATATTTCTATTAAAGAAGAAGTTATAGATGATGATTATGATTGCCCTCCTCCTACATCATCACAGGATGGTGAGGACAACTTAACAAGTGGTGCAGTAGAAGAAAATAAATCTCTATTTAATGAAATAAATAAAAATTCAGATTATAGCTTTACTCTTGACTCATTTGCTAATTTTGAACCTATAAAACAAGAAGAGGAAGAACATGATGATGACGATGAAAATGAAGAAAGTAACGATGTGGAAGATAATAACAATCAAGAGGAAAAAGAAATCCAGGGAAGTAGAACCCGAAAGTTGGATTCGAGTTCATGCAGTATACCTGTGCCTGATACTGTTGATAAAGCTATGGCTAATTTATATAATAGGGAATACGACAAGAAAGGAAATCGTCTGAACAGACAAAAACTAGAATCTGATTATATAATATTGAAGCATGATTTTGACTGTGCCATATACAAGTGTTCTGGATGTGACGAAGAATTTTTCTTTGACAAATTCTACTACCAGCACTTCCTCAGAGTTACTTGTAATATTAAGTACCGATGCAGTATTTGCAAGAATAACATGACCTTTACGAATATGTGTCAGTTAGAGGCCCATCTTAAACAAGCAGATCACTCCTTGAGCGTAAGTGAAATTAAAAGCATTTTAAATGAAGCTGACAGGAATTTGCCTTGCATTAAATTGATGAAGGAAAGCTTTCTAAGTCCGTTTAATGGTTGTGATGATGATTCTACATTCGGTATTAATGAAGAAGATGCAGAAGCTGAATTATTGCATCAATGTGTGGAATGTAAGAAGTCATTCCGAGTACTGCAGGACCATATTATGAAGAATCAAATGGGAGTTAGGTTGATTTATCGGTGTTCCGATTGTCGTTTGTTGTTACCATCATATTGTTCTTTGAGTAGCCACAGAAGGTTGCACAGACGGGAAGGTCCTCATGTCTGTCCAGAATGTGGATCCGATTTCATTTCTTGGATTGGCCTATGCAATCATGTTCTTAAACAATGTTTCCATGTTTATCGTTGTGTCAGAAGTAAATGCCTGTATTGTGGAGTTTTACTTCGGGAAAAAAAAGAGCTTAAAACGCATTTATTAAGCATGCATACTGAACTATCAGTGTACAAGTGTAGGAAATGTAAGATTGGACCGGTTTTTAAACGTTTAAACGACATGCGTTCTCACTTAAGGACAGTTCATGGTTTAAATCACCAGGCTTCTGCTCTATGGCCCGCGATATTGGTGCTGAACGAGTGTTTACTTTGCCCCGGGTCAGCTATCCCAAAAGTACATTATGTTCAACACATAATTGAAAAACATGTTTATGACCCCAACAGTTTGATTTATGGATACAAATGCTTGAAATGTAGCTTTATAACTTTGAACAAAGCCCAATTTAAATTGCACTTAACTCAAACGAAACATTTTCTTACATTAGAAGAGATGATAGAAGGTGGTTGCTTTATTCTGGTTGAGAATGAAAATAATAATTCTGTTGTGGACAGACAAATTGCTGATGTTGCTACAACTAGCGTAAATGGAAATCCTAAAGAAGTATATTCGGATAATGACGATGATGACGACGAGTCACTTAAGTTACTTTATCCGGAGAACTCTATGACCATCAAGGAAAAAATTTATGTCCCAACTGTAACTCCTGACCATCAAGTGCAACTTGTCGGCTCACCCAAACTCCTTCCGCGCGTGAACTCAACACCATCAAAGAAAACTGATTGTATCATTTGTGGATGTTCATTTAATAGTTTTTCGTCCTTTATTTGTTTCAAATGTAGTCTATATGACACATTCAAATGTTTACTTTGCAACTGTGTTCTTAAAAGAAGTGCTGAAGTTATTTGCTATCATTTTAAGAAATACCATAAAATTCAGGGCGACTCTTTTTCAAGGTACGTTTGTATTTACACCGGCAGAAAAACTAAAGGTAGTTCACCGAATAGAGATGATAATTGTTCCGAACCCAAATTTATTAAATTGGCCCTCGATCCTATTGGAAGTCAAGTCTACAAATGTGCCGTTTGTGGGAGGGTTTATTCATCTAAAGAAAGTTTTCGCAGTCATGTCATAACACATAGAAGTAAAGGTTCTTTCCAGTGCCTTGAATGTGGGGCAGGATTTATTTCTTTAAATATTCTTAAAAAGCATTTAGAATCCAGCCATTCGATTGATAATACTGATGAATACTTTCCTTCCACAACTCAGTCTAATCAAACATTGAAAGAAAACCAATGTTCAGTATGCTTTCAAGAATTCCAAGACCCTCGGTCTCTTCATTCCCATTTCAGATCACATGGAATGGCCTTTTTAAAATTAAATTTATCAAAAAAACAATGA
- Protein Sequence
- MKLVGSRPRVDVKLIYLKTEALLKDGTEDAKVALADVASMRVITALHITALACRHISGATRNHKTHCLDQVFTSTLGMLLPQNVVSGDSESSDSYDDQYIHKVGGKEQSTLREECKQSQVKEVPSLKNISIKEEVIDDDYDCPPPTSSQDGEDNLTSGAVEENKSLFNEINKNSDYSFTLDSFANFEPIKQEEEEHDDDDENEESNDVEDNNNQEEKEIQGSRTRKLDSSSCSIPVPDTVDKAMANLYNREYDKKGNRLNRQKLESDYIILKHDFDCAIYKCSGCDEEFFFDKFYYQHFLRVTCNIKYRCSICKNNMTFTNMCQLEAHLKQADHSLSVSEIKSILNEADRNLPCIKLMKESFLSPFNGCDDDSTFGINEEDAEAELLHQCVECKKSFRVLQDHIMKNQMGVRLIYRCSDCRLLLPSYCSLSSHRRLHRREGPHVCPECGSDFISWIGLCNHVLKQCFHVYRCVRSKCLYCGVLLREKKELKTHLLSMHTELSVYKCRKCKIGPVFKRLNDMRSHLRTVHGLNHQASALWPAILVLNECLLCPGSAIPKVHYVQHIIEKHVYDPNSLIYGYKCLKCSFITLNKAQFKLHLTQTKHFLTLEEMIEGGCFILVENENNNSVVDRQIADVATTSVNGNPKEVYSDNDDDDDESLKLLYPENSMTIKEKIYVPTVTPDHQVQLVGSPKLLPRVNSTPSKKTDCIICGCSFNSFSSFICFKCSLYDTFKCLLCNCVLKRSAEVICYHFKKYHKIQGDSFSRYVCIYTGRKTKGSSPNRDDNCSEPKFIKLALDPIGSQVYKCAVCGRVYSSKESFRSHVITHRSKGSFQCLECGAGFISLNILKKHLESSHSIDNTDEYFPSTTQSNQTLKENQCSVCFQEFQDPRSLHSHFRSHGMAFLKLNLSKKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -