Basic Information

Insect: Hermatobates lingyangjiaoensis
Gene Symbol: -
Assembly: GCA_026182355.1
Location: JAPFBL010000063.1:902078-934566[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.051 24 7.6 0.9 6 19 61 74 60 77 0.93

2 14 4.4 2.1e+03 1.5 0.1 4 11 77 84 77 84 0.88

3 14 0.0006 0.28 13.6 4.6 1 22 83 104 83 106 0.91

4 14 9.3e-05 0.043 16.2 1.4 1 20 169 188 169 189 0.97

5 14 0.27 1.2e+02 5.3 1.4 5 21 214 230 213 231 0.94

6 14 0.00048 0.23 13.9 0.4 1 20 237 256 237 257 0.96

7 14 0.00019 0.088 15.2 0.7 1 21 477 497 477 498 0.95

8 14 0.34 1.6e+02 5.0 1.0 2 17 505 520 504 521 0.89

9 14 0.023 11 8.7 2.1 5 22 524 541 523 541 0.93

10 14 0.0092 4.3 9.9 0.5 2 18 548 564 547 564 0.94

11 14 0.0098 4.6 9.8 0.7 5 21 571 587 569 588 0.93

12 14 0.58 2.7e+02 4.3 0.1 2 14 595 607 594 609 0.86

13 14 0.32 1.5e+02 5.1 0.0 5 20 615 630 612 632 0.91

14 14 0.00063 0.3 13.6 0.7 1 17 638 654 638 655 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.051	24	7.6	0.9	6	19	61	74	60	77	0.93
2	14	4.4	2.1e+03	1.5	0.1	4	11	77	84	77	84	0.88
3	14	0.0006	0.28	13.6	4.6	1	22	83	104	83	106	0.91
4	14	9.3e-05	0.043	16.2	1.4	1	20	169	188	169	189	0.97
5	14	0.27	1.2e+02	5.3	1.4	5	21	214	230	213	231	0.94
6	14	0.00048	0.23	13.9	0.4	1	20	237	256	237	257	0.96
7	14	0.00019	0.088	15.2	0.7	1	21	477	497	477	498	0.95
8	14	0.34	1.6e+02	5.0	1.0	2	17	505	520	504	521	0.89
9	14	0.023	11	8.7	2.1	5	22	524	541	523	541	0.93
10	14	0.0092	4.3	9.9	0.5	2	18	548	564	547	564	0.94
11	14	0.0098	4.6	9.8	0.7	5	21	571	587	569	588	0.93
12	14	0.58	2.7e+02	4.3	0.1	2	14	595	607	594	609	0.86
13	14	0.32	1.5e+02	5.1	0.0	5	20	615	630	612	632	0.91
14	14	0.00063	0.3	13.6	0.7	1	17	638	654	638	655	0.91

Sequence Information

Coding Sequence: ATGGCGTCTTTTGGGGGTGGAGGGAGGAACACGCCCCCGCCTGTCTGCCAATTGAACGGCCTTGATAAAATCTATACAGTTACAAAGGAACGAAGGGGGAAAAGCCTGGTGGGGAGCACCCAGTGCTCTCAGTACGGCTACCCCAGTTTCGACGCTGCAGTGGGCAAGTACGTATGCGCTTGCGGCAGGAAGTTCTCCAGTCAGCGTCACTTTAAATACCACTCGATGCACGAGTGCGGCAAGGTGTTCAAGTGTCCTCACTGCCAGCACACGTCCAAGACCAAGCCCAACCTCAAATCTCACATCGTCTTCAAGCACACGAGAGATAAGAGAGGGAAACCAAGCGCACTGGATCAGAGACGGTTGGAGACCCAACTTGACGGTTGGAGACCCAACTTGACGGTTGGAGACAGTTGGGTCTCCAACCGTTTCGATGTGGCTGCCTACAAGTTCTCCAGTCGAAGTCACTTGAGGTACAACTCGAGGCACCAGTACGACAAGGTGTTCAAGTGTCCTCACTGCCAGCACACGTCTAAGACCAAGCCGAACCTCAAAGCCCACATCGTCTGCAAGCACAACGTACTGCCAACTCTGCACTTTGAACCCTGGTTTGTAGGAATGAGCTTCAAATATTTATGCGAATGTGGATCTAAATTCAATGGGAAACACAACTTCAGGTACCACCAGCGGCACCTTTGTGGGAAGAAGTTCTCGTGTCAGTTCTGCGAATACGTCGCCTCCTCCAAATCAAACCTCACCAGACACCTAGCCTGCCGACACTCGCATCGTAGAGATGAGGTTAAAGTATGTATGCGAATGTGGATCTCAATTCAATGGGAAACACAACTTCAGGTACCACCAGCGGTACCTTTGTGGGAAGAAGTTCTCGTGCCAGTTCTGCGAATACGTCGCCTCCTCCAAATCAAATCTCTCCAAACACCTAGCTTGCCGACACTCGTCCTTCTACCTGCAATCCCAAAACACCCTTACCTCCATACCTTAAGCAACTCCACGATATATCAGTTGGACCAGTCGGTTGTTGTGTTCGACTGCACAGGGTTGTTGACTGATGCTAGTGGCTTGGCTCTGACGGAGGCGGTGTGTTGCAGACGCAGGCGAGAGGTTCGCGTGTTCGTGCGGCAAGGCGTACAAGGCGAGGTCCCGCCTCCGCTACCACGAGCGCCGGGAGTGCGGCAAGTGGTGGCATTGCCAGTACTGCCCCTACATGGCGGCCCGCCATCTCAGCCTCAAGCTTCACGTCTACGCCAAGCACCCCAACCACTTCGACGTCCAGTACCCTCAATAAACCACCCTGTTCTTTCTTTTCATTGTTTCATCCCAAACACCTCAAAAATGTTTGATTCCGAATGCAGTAGTACCTCGAGATACGAATTTAATTGGTTCCAGAATCCCCATCGAGTTCTTCGACACGTGTGCCAGGGCTGTGGGATGTCGTTCAAAAGGAGGAACAGGCTGACTTACCACGTGAGGTGGGAGTGCGGTCGAATGCTCAAGTGTCCTCACTGTGACCACCAGACCCAGCAGAAAAGCAAGTTGTTCCATCTGTGCGAGTGTGGTCGTAAATTCTCCCAGCTAGCCCATTTCAGGTACCACAAGAGACGAGAATGCGGTAGGAAACTGCAGTGTCCTCATTGCGACCACCAGACTGAGCAGAAAAGCCATCTTAAGAGGAAAATTTTCCACCTGTGTGAGTGCGGTCGTAAATTTTCTCAGGCATCAAGACTGAAATACCACAGGAAGAACGAGTGTGGGAGGAAGCTGCAGTGCCCACATTGTGACCATCAGACAGTGCAGAAGAGTATGCAGCTAGCCTACAAGTGCGAATGTGGCGTCGTTTTCAGAAGTGAGAACTTGCTTGTCTCTCACAGAGGAGTGGCCTGTGTGGCAAAGTTCTCCTGCCCTCACTGCCCCAAAGTCTTTACCAAGAAATTCGGTCTCAAGGCAGAGAGGACTCTGGAGTCCCTCAAAAACACTCGCACAGTCCTTACTCAAGTCAACACGTCATTTAGGCTTATTTCAAAGAAACTAGTGACCTTCTGTCACAATAATAAGTCTGTGGTAATGAGTTTGCAGCCAGCGACAAGGCTTGCAGGACACCTTCATCAAGCAAGCACTTTAAACGATTGCAACATTGTCGTTTTTAAAAATCCTGGTCCTTACAGTGAGAGCAAGATGGGCTGCCCTGCAGCCAGCCTGACTGACCCAACGGAATGA
Protein Sequence: MASFGGGGRNTPPPVCQLNGLDKIYTVTKERRGKSLVGSTQCSQYGYPSFDAAVGKYVCACGRKFSSQRHFKYHSMHECGKVFKCPHCQHTSKTKPNLKSHIVFKHTRDKRGKPSALDQRRLETQLDGWRPNLTVGDSWVSNRFDVAAYKFSSRSHLRYNSRHQYDKVFKCPHCQHTSKTKPNLKAHIVCKHNVLPTLHFEPWFVGMSFKYLCECGSKFNGKHNFRYHQRHLCGKKFSCQFCEYVASSKSNLTRHLACRHSHRRDEVKVCMRMWISIQWETQLQVPPAVPLWEEVLVPVLRIRRLLQIKSLQTPSLPTLVLLPAIPKHPYLHTLSNSTIYQLDQSVVVFDCTGLLTDASGLALTEAVCCRRRREVRVFVRQGVQGEVPPPLPRAPGVRQVVALPVLPLHGGPPSQPQASRLRQAPQPLRRPVPSINHPVLSFHCFIPNTSKMFDSECSSTSRYEFNWFQNPHRVLRHVCQGCGMSFKRRNRLTYHVRWECGRMLKCPHCDHQTQQKSKLFHLCECGRKFSQLAHFRYHKRRECGRKLQCPHCDHQTEQKSHLKRKIFHLCECGRKFSQASRLKYHRKNECGRKLQCPHCDHQTVQKSMQLAYKCECGVVFRSENLLVSHRGVACVAKFSCPHCPKVFTKKFGLKAERTLESLKNTRTVLTQVNTSFRLISKKLVTFCHNNKSVVMSLQPATRLAGHLHQASTLNDCNIVVFKNPGPYSESKMGCPAASLTDPTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -