Hlin012305.1
Basic Information
- Gene Symbol
- lola
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000063.1:1451466-1460587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.12 14.8 2.1 1 21 14 34 14 35 0.95 2 11 0.00012 0.056 15.8 1.5 1 23 43 66 43 66 0.96 3 11 0.014 6.6 9.3 0.2 1 17 73 89 73 89 0.93 4 11 0.00035 0.16 14.4 0.5 1 21 214 234 214 235 0.95 5 11 7.9e-06 0.0037 19.6 1.5 1 23 243 266 243 266 0.95 6 11 0.0011 0.51 12.8 2.2 1 19 273 291 273 293 0.96 7 11 0.0015 0.71 12.4 3.1 1 23 314 337 314 337 0.97 8 11 1.9 8.7e+02 2.6 1.1 1 17 344 360 344 361 0.93 9 11 5.4e-05 0.025 16.9 1.1 2 21 364 383 363 384 0.94 10 11 0.00091 0.43 13.1 7.0 1 23 392 415 392 415 0.92 11 11 0.0034 1.6 11.3 3.5 1 23 426 449 426 449 0.92
Sequence Information
- Coding Sequence
- ATGTTACCTTGTCATCATGGTGGAGGCTCCAGCCGAGACTTCCAGTGTCCCTCATGCAGCAAGACGTACAAGTACTACAGTTCTCTGATGACCCATACCAAGTTCGAATGTGGTAAAGAGCCACAATTTTCCTGTCCTCATTGTAGTTACAAGAGCAAGCAAGCTGGTTCTCTTAAAATCCACATCAACTTGAAGCATAACCCGAATCCCGTGCTGTACAGATGCCCCGACTGCGACTACACGGCCAAGGTCAAGGGCAATCTCAAGCCTTGCGCGGCTAGCGCCAGTCCGGAGCTTCGTGTCCTTAACTCCTTTCCTTCTTCCGGCTTTCTTAAGATGTTTTCTCTCCCCACGGTGGGATTTGGAAAGCAACCAAAGGATCGTCAGCCCTATCGAACTAATGTCGTTGCTGGTGGGACCGAATATGGTGGACTTAGGTCGTGGACCCCCGCAGCGCAAAGTCCTTCTTGGGAATTCACGTGGACTGTCTCGTTTTCCTCATTCGTGAGGATACGGCTGGTTTCTCGTGCCATGGCAAAGGGGTTCCACGATAAAGACCATCAACCTATTTTGTTTTATCATAATATGACAGAAAGTCCCAGGAACAGGATTAAATCAAGACAGGTCGGTCGAAGCAGCTTCCCGTGCGAGGCATGCGGCAGGCGATACCGCCATTCCACCTCCCTGGCTGCTCACAAGCGAtacgaatgcggcaaggagccccagtttccctgcccctactgcccctatcgctgcaaacaacccaagaacctcaaagtccacgtcaatctcaaacacaaCCCCAATGCCAGGGTGTACAGTTGTTCCTTCTGCCATTACTCCTCCAAGAGCAAAAGCAGCCTCAAGTCTCATGCCATTGGTGTTCCAGGTCAGAACAAGATAGGTCAAAAGACACTGGTTCTTCCAGGGGCAAGTGACTACTCCTGCGACTTCTGCGAGTCATCCTTTAAGAAGCTCTGTCTCCTGAGGAGGCACATATCTTCCATCCATGATCCTTCTGCCAGGATTTTTTCCTGTCAACTTTGTGCCTATTACACAACTAGAAAAGATAACTTCCGAGACAACCTGAAATGCGAATTCTGTGGAAAGAAATATAGTTCTCAGAGTAACAGAGCTCGACACCAGAACTTCGAGTGCAACAAGGAGCCTCGCTTCTTCTGTAACTACTGCGACTACAAGTGCAAGCAGAAGACACATCTTAAGGCCCACACGCTGGCAAAGCACTGCCCAGAGTCGGGCTGCGAAGTAAGCCTCTTCAGCTGTCCCTCGTGCTTCTACGTCGCCAAGAGGAAAGACCACCTCAAACGCCACTTTCTTCTCAAGCATCAACTGCTCACCACTTCAGACTTGCCCAGCTCTTGA
- Protein Sequence
- MLPCHHGGGSSRDFQCPSCSKTYKYYSSLMTHTKFECGKEPQFSCPHCSYKSKQAGSLKIHINLKHNPNPVLYRCPDCDYTAKVKGNLKPCAASASPELRVLNSFPSSGFLKMFSLPTVGFGKQPKDRQPYRTNVVAGGTEYGGLRSWTPAAQSPSWEFTWTVSFSSFVRIRLVSRAMAKGFHDKDHQPILFYHNMTESPRNRIKSRQVGRSSFPCEACGRRYRHSTSLAAHKRYECGKEPQFPCPYCPYRCKQPKNLKVHVNLKHNPNARVYSCSFCHYSSKSKSSLKSHAIGVPGQNKIGQKTLVLPGASDYSCDFCESSFKKLCLLRRHISSIHDPSARIFSCQLCAYYTTRKDNFRDNLKCEFCGKKYSSQSNRARHQNFECNKEPRFFCNYCDYKCKQKTHLKAHTLAKHCPESGCEVSLFSCPSCFYVAKRKDHLKRHFLLKHQLLTTSDLPSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -