Hlin064683.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000006.1:3865325-3870214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1 4.8e+02 3.5 4.9 1 23 66 88 66 88 0.96 2 17 0.042 20 7.8 3.2 1 21 96 116 96 117 0.95 3 17 5.9 2.7e+03 1.1 0.4 2 10 125 133 124 135 0.89 4 17 0.32 1.5e+02 5.1 0.2 3 21 398 416 397 420 0.91 5 17 0.0066 3.1 10.4 0.0 2 20 489 507 489 508 0.96 6 17 0.019 8.9 8.9 0.5 2 20 513 531 512 532 0.93 7 17 7.3e-06 0.0034 19.7 0.7 2 23 557 578 556 578 0.96 8 17 0.039 18 8.0 0.4 3 21 587 605 586 608 0.88 9 17 0.078 36 7.0 2.0 1 10 613 622 613 636 0.76 10 17 0.88 4.1e+02 3.7 1.3 1 21 641 661 641 664 0.86 11 17 0.00072 0.34 13.4 0.6 3 23 669 689 668 689 0.97 12 17 0.00014 0.064 15.7 0.9 2 22 696 716 695 718 0.88 13 17 0.013 5.9 9.5 0.4 1 23 724 746 724 746 0.98 14 17 0.0032 1.5 11.4 3.4 2 23 752 773 752 773 0.97 15 17 1.8e-06 0.00083 21.6 0.5 1 23 777 799 777 799 0.98 16 17 7.5e-06 0.0035 19.6 0.6 1 20 805 824 805 827 0.93 17 17 0.0013 0.61 12.6 2.7 1 23 833 856 833 856 0.98
Sequence Information
- Coding Sequence
- ATGGGAGAATATGTTGTGCGAGCCACTCCCCGGAGTGGACATAATCTTGTCGGTCAGCTACTGTTTATTATAAGTATAGATGTTGGAAACAAAGAAAGAAAAATCCTTAAACAAATAAAAGCAGATAAAGAAAATTCCAAAAATGCTTCAATTAATGAAGTTTTACAAACTGAAAACCCTTCCAACTCCAATGAGTTCCAATGTCATATATGCCTTCACTTTTTTGAAACTTTTGACATATTTGAAAAACACGTCAAGTTGCATAATCTTGCAAAATCAAGATTTTATAAATGTAAGGTATGCGATTTTTCATCTCCCAATCTGGAAGCTTATTGTCGTCACTTGTGCAACTTGAATACGAACAAATATATATCTTGTAAGCAGTGCAAAAGAAATTTTATTGGAGTTAATCAAAGCGAGTCTGATCATTTTGTGTGCTTACAATGTGTAATAAAAAATAAGGAAAAGAATGGGGGTAACAGTGCGTCCAATAAAAGAGGAACTGTCAATTCTGCTGAGTCGGGAAATGTGTCCAGCAAGTTTGGTGATAATGGAATCCGGGGAAATGTGCAAAAGTCATCTGGAACACACTTGTCTAGTTTTACCTCGAAACATGTGAAACCCAAAACTCAACTTGTTCGGAAGTTAACGACAGAAGGGTCTATAGAGTATGAAGAAGAGGATTTCTCTGAGGACCAAATGAATGAAGTCTCAAGAGAGGTGACAATGATCGATCAGTCGTCAAGCCATCCAGGAAGTCACTTCATGGATGTCGAAGGTGATGAAGGTACAAGTGAATATACTTTTGAGCATGCGAAGCCTAATCAACAAGCTATGATTAAAACTGAGTTGGAAGAGGATCAGGTTAAAGAAATTATTGTACCCGACCATTTGTTGGAACAAATTTCAAATAAGACAGGCAGGAATCCTCCATATATGCTGAAATGCAGTAATTGTGAAGAGGTTCTCGATGTGAGAGAACTTCCAGTTCATCGTTGTTTCCTGGAGCTTGAGGCAGTTGAATTTTTCGAAGTGGAGAATGCATTGGAAATCGATATGGGAATGTCGAAAAAGGAACCTTTGGAAGATGGAGATCAGTATAGCTATGTTGACCAAGATGGTTACTACCATCAAGATGGGGAGATAGTGGGTGACGAAGAAACCGATGCTAAATATCAACCACGCCTTCTTTGTAAAACTTGCTTTGAGCAATTTCCAAGTATTGTTCAACTGAGGGAACACTGGCAGGATACTGGTCACGCTTGGGAAGTAGGCACTGTCAATATTGACGTTAAAACGATCAAAGACAAGGTCAAGAATAATGAAAGAACTTTTAAAGTTGTCAAACAAATGTTTTCAATGAAAGCTAATTTACCAATGCAGCCGAATGTCATTGAAAGCGACTACACTGATGAACACATGTTCAACATTAAAAACATGTTTGTCAAAGTAAGGGCTAACAATGAATGTGAAACTTGCGGAAAACTGTTTCCCACTGAAGATGCTATGAAAGATCATATGGTTGATGAATGTTTGACTTGTGTTTATTGCAATATTAGGTTTTTAAGTAATAGCCTCCTGAAGAAGCATTACCAATGTACCGGTCACTGGAGGAAAATCGTTCGAGATCAAGACCCCAGTGTGAAAGTGGCCGATGCTTTACCTCTTATTTGTCCAATGTGCGACAAAAGTTTCTTTTCTCGCTATAGTTTAGGGACCCATCTTAAAACCCACTATAAGGGTACTTCAAAAGGAGCTTGTCATTACTGCTTCAAGGAATTCGAAGACGAAAGCAAAATCAACGATCATGTAGTTGAAGTGCACAACGCGCAGTTGTACAAATGTAAACATTGTGAGAAGACATTTTTATCAGAATGGAAAAAAGATAAACACCAGGCTTTAAAACATAAAAATGAGTGCTTCGAATGCCGACTTTGTAGTTTGAAGTTTAAATCGCTTAAAATCTTATTAAGGCACAATGAGCAATTTCACAGAGAAAAAGCTTGTAGGATCTGTGGTAAATATATTAACAGTTGGCAAAGTTTAAAGCGTCACGAAAAGCGACATTTTTATGAGCAAGGATTGCAGTGTACTCTGTGTCAAAAAATGTTTAGAAACAAAACTGCTTTGAAAGTGCATAATGCGAACTATCACAAAGGGGAATTTAAGTATTACTGCGATCATTGTGAAAGTGGTTTTATGAATGTAGAGTCTTTGGAAGAGCATAGAATAGTGCATTTCAAGAAGAAGAATGAATGCAGTAAGTGTGGTAAAAAGTGTCCGACTAGGACGGCGTTCTGGATGCACAAGAAGATGCACGATGGGCCTTACAACTGCAACGTCTGCGGTAGGATATTCAGAGACACCTCTCTGCTAGCTATACACAGAAGAAAGCACCTTCGAGCTCGCCCCTACCAATGTCCCCACTGTCCAAGAATGTTCTCAGTTGCCGGCACTTTGCGGCGACATCTCCCCAAACACACAAGGGCGTATCCCTATCGGTGCGCTCTGTGCAGGAGAGGCTTCATCAGCCGCTACTCCTATCATCGCCATCTTGAAACACTGCACAACGTCAGACAGTCCGAAGCCCCCTCCAAACCTTCCTCCCTGCCTCTTAACCCAACCGATGAAGACATCTTTCAGGCGGCTGATACTCTTATTTCTGATGATTCGGTCATGCTTAATGGTTATCCAAGAGAAGAATCATCCCAACTCATCACTGAAGTGGTTGTTGAAACAACGGAACTTTTTGATGAAATTTTAAGTTAA
- Protein Sequence
- MGEYVVRATPRSGHNLVGQLLFIISIDVGNKERKILKQIKADKENSKNASINEVLQTENPSNSNEFQCHICLHFFETFDIFEKHVKLHNLAKSRFYKCKVCDFSSPNLEAYCRHLCNLNTNKYISCKQCKRNFIGVNQSESDHFVCLQCVIKNKEKNGGNSASNKRGTVNSAESGNVSSKFGDNGIRGNVQKSSGTHLSSFTSKHVKPKTQLVRKLTTEGSIEYEEEDFSEDQMNEVSREVTMIDQSSSHPGSHFMDVEGDEGTSEYTFEHAKPNQQAMIKTELEEDQVKEIIVPDHLLEQISNKTGRNPPYMLKCSNCEEVLDVRELPVHRCFLELEAVEFFEVENALEIDMGMSKKEPLEDGDQYSYVDQDGYYHQDGEIVGDEETDAKYQPRLLCKTCFEQFPSIVQLREHWQDTGHAWEVGTVNIDVKTIKDKVKNNERTFKVVKQMFSMKANLPMQPNVIESDYTDEHMFNIKNMFVKVRANNECETCGKLFPTEDAMKDHMVDECLTCVYCNIRFLSNSLLKKHYQCTGHWRKIVRDQDPSVKVADALPLICPMCDKSFFSRYSLGTHLKTHYKGTSKGACHYCFKEFEDESKINDHVVEVHNAQLYKCKHCEKTFLSEWKKDKHQALKHKNECFECRLCSLKFKSLKILLRHNEQFHREKACRICGKYINSWQSLKRHEKRHFYEQGLQCTLCQKMFRNKTALKVHNANYHKGEFKYYCDHCESGFMNVESLEEHRIVHFKKKNECSKCGKKCPTRTAFWMHKKMHDGPYNCNVCGRIFRDTSLLAIHRRKHLRARPYQCPHCPRMFSVAGTLRRHLPKHTRAYPYRCALCRRGFISRYSYHRHLETLHNVRQSEAPSKPSSLPLNPTDEDIFQAADTLISDDSVMLNGYPREESSQLITEVVVETTELFDEILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -