Hlin029056.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010001931.1:2086798-2104400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.019 8.6 9.0 1.0 1 23 151 173 151 173 0.96 2 31 5.3e-06 0.0025 20.1 0.7 1 23 186 208 186 208 0.98 3 31 0.00078 0.36 13.3 0.7 1 23 224 247 224 247 0.95 4 31 0.011 5.3 9.6 1.0 2 23 254 276 253 276 0.95 5 31 0.0025 1.2 11.7 0.1 2 23 349 371 349 371 0.95 6 31 0.01 4.8 9.8 0.8 1 23 398 421 398 421 0.95 7 31 0.13 60 6.3 0.0 3 21 429 447 428 448 0.92 8 31 2.6 1.2e+03 2.2 1.4 1 23 459 481 459 481 0.97 9 31 0.0026 1.2 11.6 0.2 1 23 515 538 515 538 0.95 10 31 0.58 2.7e+02 4.3 0.2 1 23 554 577 554 577 0.94 11 31 0.48 2.2e+02 4.5 1.0 2 19 584 603 583 608 0.82 12 31 0.046 21 7.7 0.1 2 23 617 639 616 639 0.94 13 31 0.0012 0.57 12.7 0.4 1 23 645 668 645 668 0.95 14 31 0.0022 1 11.9 4.5 1 23 676 698 676 698 0.96 15 31 0.095 44 6.7 0.5 2 23 763 785 762 785 0.94 16 31 0.0013 0.61 12.6 2.1 2 23 792 813 791 814 0.95 17 31 0.0064 3 10.4 3.5 1 21 832 852 832 853 0.94 18 31 4.4e-06 0.0021 20.4 2.5 1 23 873 896 873 896 0.97 19 31 0.14 64 6.2 3.7 1 23 899 922 899 922 0.97 20 31 0.16 77 6.0 1.2 2 23 929 952 928 952 0.95 21 31 0.24 1.1e+02 5.4 1.8 1 23 959 982 959 982 0.95 22 31 0.0067 3.1 10.3 1.3 2 23 1020 1041 1020 1041 0.97 23 31 0.00043 0.2 14.1 0.6 1 23 1046 1068 1046 1068 0.96 24 31 0.0018 0.86 12.1 0.1 1 23 1160 1183 1160 1183 0.93 25 31 0.017 7.8 9.1 0.1 2 21 1187 1206 1186 1207 0.93 26 31 0.2 92 5.7 1.8 2 23 1275 1297 1274 1297 0.94 27 31 0.2 92 5.7 2.5 3 23 1305 1326 1303 1326 0.96 28 31 0.18 83 5.9 1.2 1 23 1371 1394 1371 1394 0.92 29 31 0.054 25 7.5 0.0 1 20 1439 1458 1439 1461 0.93 30 31 0.0058 2.7 10.5 0.0 1 23 1467 1490 1467 1490 0.93 31 31 0.27 1.3e+02 5.3 0.2 1 20 1495 1514 1495 1516 0.92
Sequence Information
- Coding Sequence
- ATGTCAACTACAGGGACTAATCCAGAAAAATTTGAAGATTTATGCAGGCTGTGTGCCTCCTACGATAATATTAAGATGGATATTTTTGGTGAAAAAGGAAAAGAAAGGAATCTGAGTAATAAGATAACAACTTGCCTTCCGTTTGAGGTGTCTGAAAGTGACATTCTTCCAAAGTCTCTGTGTTATAACTGCATATTTCATTTGGAAACATTCTTTAACTTTCGGAATAGTTGCATAAAAGCAATAGCTCAGTTGGAAAATTATTTAAAACAGTCAGGAATGAAGTATTATGAAGTGGGATTACCCAGGAAAGTGGAATCTGAAGAAATTTATCCTAGTTGTGACTTTGATGACCCTCCAAATCCAGCTGATTTTTTAGAAGCCTGCTTGGGAGAATCACCCCATGGAAATGCTGAGAAAAGAAGCCTAGTAGAAGGTGAAGAAGGCCCTTTCAGGTGTGATACCTGTGGTAGACTTTTTCTTTCAAGAAGTTCATTGTCTGTCCATGCAAAATTCCATTCGGATAAAGTCAATGGGGGCCCTGTGCGGGAAATGTTTCCTTGTTACGTTTGTGATAAAGTATTCTCAAGCAAAGGTCACCTTGCACTTCACTCACGAGTTCACATTGGCGAAGCACACCCTCCTAAAGGAACTCCACCCAACAAGTTGTACTATTGTGATTTGTGTAATAAATCTTATTCAATGGCCAAACATCTTTGGGGACATGTGAGTAGTGCTCACAGAGGTCATCCACTTGTCACCTGTAATTTTTGTTTGAGAACGTTCTCTTCTATTGCAAATCTTGATGACCATCGTCGGTTTAAGCATCCTAATGAAAAAGCTGAAATTGAGAATAGTCCAAATCCTCAGGAAAAGACAAGTGTTGAATCAGAAAATGCTGATGACGATAGTAATACGAAATCAGATGATAAGAAGATGAGTGAGGAGAGTGGTGGTAGTCGAAGGAAAAGCTCAAAACCAAGAAAAATTGAAAGAGAAGAGATAGAGGAAGGTGAGATTGTCATGGGTAGTGGACCACCTCCAACTTGCATGTTCTGCGGTGAACAGTTTGAAACTCAACCGGCTCTCACAGAGCACTTGATGGTTGTTCATGGTACTCAAAATCCGGCTGATGAAGGTCATTTTGATTTCTCTGATTTTGCTGAGAATATGATGGAAAGTGAGACAGTATTTTGCTGTGAGATATGTATCAGAGAATTCAACGACAGAGCAAGTTTATGGTTACATATGCTGTATTCTCATAGAGATGAGGCCTCGAAAGCTTGTGGTCTGTGTCTTAAAATCTTTCCAAATAATGAAACACTTATTGAACACGTTGAAACGTGTAATCCAAGGGGAGCTGAAAGAAGGAGGTACAGTTGTACAGTATGTGCTCGACAACATGATTCTCGTAAGAAACTAGTTTCTCATGCTAGAATCCATAGACTAACTGATGAAGAGGGTAATCTTATTGATCCAGAATCCGTTGTTATATTAAATAGCTCAGGCTATTTGCCTGGTATGGTTGAAGAAGGTTGTGGATTTCAATGTGAAGTTTGCTATAAACCTTTCGAAACGGAAGCAAAGATGATAAAACATAAGGCTAGTGCTCATAGAGAAACGGCTGGTATGAAAGCAAGTAATTCTAGTTCATTCTTCTTTGCTTGTGATATCTGCGGTCTGGCTCATTCATCCAGGACTGAGAGGTGGAAACACGTAGCCACCGAGCATGTTGGTGACGAGTCCGTCACTTGCCCCGCTCCTCAGTGTGGTAAAGTGTTTGCTTCTGAGGTTCTTAAAAAGGAGCACTGTGATAGTCATCATGACCTCCAAGGAGTCTACCCGAGTACATGTGAAATTTGTGGAAAACTCTGGAATACAAGAGTTGAATACTGGAAACATATGATGGGAGTTCATCCTGATTGTTTGCCTTTCATATGTGGTGTTTGTTTGAAAGTTTTTTGTAACCTGACGGATCTAGTGTCCCATGTTAGAGCAAATCATTGGCCTCTGAGTGGAGGTGAACACTGCTGTGATATTTGTGGAAGGCCATACTCGAAGTTATCAAAAATGTCTCGCCATCGAAAGGTGCATTCAGTTGTCGATGTTCCAGAAGATTTGAGATCTCTAATTGATAATCCTAAAGTGGAAATTAGTGAATCACACTTTATGGAAACAGCAGGCCCACCATTTCGTTGTGATCAATGTGAAGGTGATAAGGCTTCTGTGGAGTATGATACCATAGAAGATTTAGGTAAACACAGAAAGGATGTTCATAATGTCGTTCCGTGTGACCTTTGTATTAAATATTATGGAAGGACTTCACATTTGTGGAAACACGTTAATAAAATTCATAAAGGGCATCCTGATGTTACTTGTCCTCAGTGTCAACGTACATCTGCATCCAGAGGTCATCTCGCAAATCATCTGGAAAAACACCATCGCAGTGAGTCGGCTGAATCTAAAACAGACCAAGAAAGTGCTGACGCAGTCCATTCGTGTACTAAATGCGATAAAATATTCCGCAAGGGGTCTCTGATGAGGAAGCATTTAAAACACTGCAAAGGTCCTAGACCTCCTCCGCCCGTGAGTCTTCCTGCTCCTGTGAATGGAATATACACATGTGAAAAATGTAACAAAACTTTTACCGTTCAAAATACGCTCTACAAACATATGAAGAATGTTCATGTTTTACATAAGTGTGAGTTATGTGAGGAAAAACTTGATAGCAAAACATTGTTATATCAACATATTTTGAAGTGCCATGCGGATCATCCTAATGTTAAATGCGATGTCGCCAATTGTGATAAAATCCTCCGTTGCAAAGCAGATTTAGATAAACATAGAAGAACTCATAAACAGTCGATTGTGATACATATTTGTAAATTTTGTGCTGAAATGATACCAAGTAAAATAAAACTTCGTAAGCATCTTAAAAGTTTTCACAACAATGACACAAAACATCTGTGTTTTATTTGCATGCAAGCTGCATTGAGCTTTGAAGAGTTAAAACACCATATTGAAGACGCACATGCAGCTCAGTTGAAGCGTCCGAATACTTGTCCTGTTTGTGCAAGATCGTGTTCAGCCAAATCAAAACTATTGGATCACATTAAAAATCATGGTCCCACATTTCATCCTTGTAAACTTTGTCTTAAAATATTTAAGTCCGCAGAAGAACTTAAAGATCATATCGACAACCATCCAGGAGATACCACTGAGGAAGAGGATGAAGAAGAAGAGGAGGAAGATGAGATTGAAGAAGTTGAAGAACTGGATGAAAACAGCATAATGGATATTATTGGGGCTGGTAAAAGCAGTGTTGGATCTATTCAAGAAGATTTAGAAGAAAGTTCTAGAACAGTTGATAGTCCAGAGCATGAAACAAGTAAAGCTACTTCAGAAACTAATTCTGAAGACCTGAAACGAAAATTAGAACCTGAAAACATCAAATGTGAAAAAAAAGTGAAACTAGAATTTTCTTGCGTAGCTTGTGATCAAACATTTTCTGATCGGACGGCTCTTACAACTCATGAAGAGGTAGATCATTGTGATTTGATTTGTAAAAAGTGTGGTTTAGTTAGCTGTGACGAAAATGAACTTGAAGCTCATTTGAACATGTGTGGAGTTACTATTAAAGTAGAAGAAACGAAGGAAACTAGCACTGTGCTGGAAAGTATGCTAACTTCAACGTCACGTCTGTCAGAAGATAGCAATAGCGATGGTGCTCAGTCCACTATATACCGGGCACCAACTGATGAGAAAGTTAAAAGTAATTCCAAAAATTCTAGGAAAGTTTATGTTGATGATTACACTCCATGTAAATGTGAACTTTGTGGAAAGATATGGCCAGCCAAACGCCACTTGTGGCAACATCTAATTAGATTTCACAAATCAGAATCCAGTACAGCTTGTGGAGTTTGTTTAAAATGTTGTCCTGATTATAGGGCTTTGCATGTTCATTTATTGACGGAACATGTAAACAATTACAATGGAGAGGGAACTAATCTTACGTGTCGTGTTTGTGGGAAATATCACAATGCACGTGCCAAACTCCATAGTCATGTTAGTATTCATCATGGTCACGAAGAGCGTGCTCTTACTTTAGCACATCAATGTCTTTTCTGCGATAGGTCATTCCCTCTGTTCCCAAAATTATATGAACATTTAATTAATATGCATAAATCTGATTCTGAAGCTTCTTTGAAATCCATTTCTATGATGGAGGAGAATAGCTCGAAAAAGACCGTAAACAATAAAGGAAATAAAAATTCAGGCTGTGATAGTGTACCAAAAAATACTAAGTTACCGTTTTATAGCTGTGAAGTATGTTCATTGGTGTTTGCAAGTGAAGTTGGATTAGCTAATCACAAGTGGGTTCATATGAATTCTGATAACTTTAAATGCGGACAATGTGGTGAAGTTTTTGGAACTGCCGCTGGTTTGGGGGAGCACAAGGCAGTAAAGCATAAGGGAACTGAATTCATATGTGCTGATTGTAAATCTACATTTGGAAGTTACCAGCAGCTTGCGACCCATAACAAGTTGTGCCGAAATAAACGAAAGCTTGAAGGGACAGAGATAAAGACTGAAGAGGGTAGTGTAGCTGAGGCGGAGGAATGTGACACATCTGCTGGAAGCCGAAATGAAAATGCTTCTGATTCTTCTGACGACAGTTCTGAttcagattcatcgtcttcatcatcgtcatctgacgatgatgatgatgatgacgacgatgatTCCTCTAAGTCTGATGAAAATGAAATTAAGACCGAGGTACATGAAGTTTCTGGAGATTCTGATACTGAAAGACCTAACAGCCAGAACCCTACTTACACAAAATCAGCATTATCGGAAAGTTCAACAGATGATGAAACTACTCCTCAAGTGGAAACCATGGTATGTGAGGACATCGTAGAAATCGTAGAAGTTGACGCCAATGCTAGCGTTGGCGGATCAACGGATTAA
- Protein Sequence
- MSTTGTNPEKFEDLCRLCASYDNIKMDIFGEKGKERNLSNKITTCLPFEVSESDILPKSLCYNCIFHLETFFNFRNSCIKAIAQLENYLKQSGMKYYEVGLPRKVESEEIYPSCDFDDPPNPADFLEACLGESPHGNAEKRSLVEGEEGPFRCDTCGRLFLSRSSLSVHAKFHSDKVNGGPVREMFPCYVCDKVFSSKGHLALHSRVHIGEAHPPKGTPPNKLYYCDLCNKSYSMAKHLWGHVSSAHRGHPLVTCNFCLRTFSSIANLDDHRRFKHPNEKAEIENSPNPQEKTSVESENADDDSNTKSDDKKMSEESGGSRRKSSKPRKIEREEIEEGEIVMGSGPPPTCMFCGEQFETQPALTEHLMVVHGTQNPADEGHFDFSDFAENMMESETVFCCEICIREFNDRASLWLHMLYSHRDEASKACGLCLKIFPNNETLIEHVETCNPRGAERRRYSCTVCARQHDSRKKLVSHARIHRLTDEEGNLIDPESVVILNSSGYLPGMVEEGCGFQCEVCYKPFETEAKMIKHKASAHRETAGMKASNSSSFFFACDICGLAHSSRTERWKHVATEHVGDESVTCPAPQCGKVFASEVLKKEHCDSHHDLQGVYPSTCEICGKLWNTRVEYWKHMMGVHPDCLPFICGVCLKVFCNLTDLVSHVRANHWPLSGGEHCCDICGRPYSKLSKMSRHRKVHSVVDVPEDLRSLIDNPKVEISESHFMETAGPPFRCDQCEGDKASVEYDTIEDLGKHRKDVHNVVPCDLCIKYYGRTSHLWKHVNKIHKGHPDVTCPQCQRTSASRGHLANHLEKHHRSESAESKTDQESADAVHSCTKCDKIFRKGSLMRKHLKHCKGPRPPPPVSLPAPVNGIYTCEKCNKTFTVQNTLYKHMKNVHVLHKCELCEEKLDSKTLLYQHILKCHADHPNVKCDVANCDKILRCKADLDKHRRTHKQSIVIHICKFCAEMIPSKIKLRKHLKSFHNNDTKHLCFICMQAALSFEELKHHIEDAHAAQLKRPNTCPVCARSCSAKSKLLDHIKNHGPTFHPCKLCLKIFKSAEELKDHIDNHPGDTTEEEDEEEEEEDEIEEVEELDENSIMDIIGAGKSSVGSIQEDLEESSRTVDSPEHETSKATSETNSEDLKRKLEPENIKCEKKVKLEFSCVACDQTFSDRTALTTHEEVDHCDLICKKCGLVSCDENELEAHLNMCGVTIKVEETKETSTVLESMLTSTSRLSEDSNSDGAQSTIYRAPTDEKVKSNSKNSRKVYVDDYTPCKCELCGKIWPAKRHLWQHLIRFHKSESSTACGVCLKCCPDYRALHVHLLTEHVNNYNGEGTNLTCRVCGKYHNARAKLHSHVSIHHGHEERALTLAHQCLFCDRSFPLFPKLYEHLINMHKSDSEASLKSISMMEENSSKKTVNNKGNKNSGCDSVPKNTKLPFYSCEVCSLVFASEVGLANHKWVHMNSDNFKCGQCGEVFGTAAGLGEHKAVKHKGTEFICADCKSTFGSYQQLATHNKLCRNKRKLEGTEIKTEEGSVAEAEECDTSAGSRNENASDSSDDSSDSDSSSSSSSSDDDDDDDDDDSSKSDENEIKTEVHEVSGDSDTERPNSQNPTYTKSALSESSTDDETTPQVETMVCEDIVEIVEVDANASVGGSTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -