Hlin020508.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000138.1:4554691-4567729[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.5e-06 0.0026 20.1 2.0 1 23 134 156 134 156 0.98 2 15 6.3e-05 0.029 16.7 0.9 1 23 162 184 162 184 0.98 3 15 7.8e-06 0.0036 19.6 0.5 1 23 291 313 291 313 0.98 4 15 0.16 76 6.0 5.7 1 23 319 342 319 342 0.95 5 15 0.00017 0.08 15.4 2.2 1 23 362 385 362 385 0.97 6 15 0.0038 1.8 11.1 0.3 2 23 396 417 395 417 0.95 7 15 3.4e-05 0.016 17.6 0.4 1 23 424 447 424 447 0.97 8 15 0.0012 0.55 12.7 3.4 3 23 453 473 451 473 0.96 9 15 0.0028 1.3 11.5 2.8 1 23 480 503 480 503 0.92 10 15 0.00016 0.075 15.4 0.2 2 23 510 532 510 532 0.96 11 15 1.3e-06 0.00061 22.0 0.8 1 23 538 560 538 560 0.98 12 15 0.0019 0.91 12.0 0.2 3 23 568 588 566 588 0.97 13 15 3e-05 0.014 17.7 0.3 1 23 594 616 594 617 0.96 14 15 0.02 9.2 8.9 0.1 1 23 627 649 627 649 0.94 15 15 4.6e-05 0.021 17.2 0.1 2 23 894 915 893 915 0.97
Sequence Information
- Coding Sequence
- ATGGCAAACTCTATTGAGGAGAATTTTAATTTGAACTTGGAATGGATACCAGTAGAAGATATTGGTGAAGGAATTGGAACTATTGACAAAGACTGTATTGTCATCCCTTCCTCCCCATGTTACCAAAAAGTAGAACTAGAAGACGATGAAAACTTTCCTGTTACCCAAGGTCTAATTGAAATTGAGGTAACTGAAGAAGAAGTTGTTGCTGGTGATTGGAATATTCCTGATGGAAGGTCCAGTCAAACCAAGAGGGTCAAAAAACCCAGCAACATCGGGCAGTCCTTTTCGTTGCCACGAGATGATGATCCTGTGTGTCATCTGATAAGTGAAGCTGGTGATGTCAGTACTACAGTACCTCTTCTAGAAGGCCAAGATGAATACTTCCGTCTACATCCTTATCCATGTGATTTTTGTAGTCGACGATTTAGTAAGAAGTCCATGTTGTCAAGTCATATGCTTACTCATCAATTAGAAGAATTTCATAGATGTAGTGTGTGTGGTATTCAGTATCGTCGAAAATTAGAGCTTGTGGAACATATGAAAATTCATTCGGTTAGTTCAATGAATCAGTCATCTGTTTTTGGCAGTGATTATGGAAGTGGACCTCAATCGGAATTGAAAAAAGTTAAGAAGAAGTCATCGAAAAAAAAAGGAAAGTGGCAAGATCATTTTGCTCTTCCAAGTGTTAGTTTCAACAAGAAAGTGAATTCTGAATTGGGACAAATTTTTAATATCAATAAATCGTTAACAAGTCCTAATGAAAAGTTCATTGACATTCCTATTAAAACTGAACTTTCTTCGGATGAAGATTTTACATTGTGTGGTGCGAATGGAGAAAAATTTCCTGTGCTTGATCCGAGCAGGCCGTATGTGTGCCAGCATTGTGGAGTAGGTTTTGCTAGGCAAAAAGCACTAAATTCTCATACAATGATACACGTTGGTGATTCAGCCTATGAGTGTGAAAAATGCCACGATATGTTCCAAAGTGAAGAACATTTAAGACAACATAAATTTAGAAAGCACATTCGAATATACAGTAATAATAAAAAGAGCGTTGATGATGATGATAAATTGAAGCCTTTTAAGTGTGATCAGTGTGATTTGTCCTTTTCGTGGTACAACCAACTTAAGCGACATCAAAGGAATCAGCATGCCGAAAATAGGTACAATGAAGAAAAGCTAATTTGTAACTTGTGTAATGTAAGTTTTAAAACTGAAAACTCATTTCTTATTCATAAAGAGGTACACAAAGCGTCGACTGAAATTTATTCATGCACAACATGTGGAGAGGAATTCTGTGACGCTGATGAAGTGGAGCTACACATGAAGGTTAAGCATGACTGCCCTCATTTATGTCATAGTTGTGGCAGCGCTTATAAGGACAGTAAAGCCCTGAGGAAACACCTTCTCACTCACTTGGACCAACCCAAATCCTACCATTGTCCTACTTGTAACAGACTGTTCCATAATCGAGGAAAATTAAAAAAACATGTAGAAGCCGCGCATGATGGTAACCAGATTGGAGAATGTGGTGAATGTGGGCAGAAGTTTCCTGACGCAAGTTGTTTAGCAATTCATCGGCAGTCTGTACATGGTACAGGCAGACTATTTCCTTGTACTCAGTGTGGAAAAACTTTCACATCCCGTAGTTCTCAGCAAATACACGTTCGTGTACACACTGGTGAGAAGCCATATGGGTGCAGATTTTGTTGGAAAGCGTTTGCTGATGGTGGAACTCTGAGAAAACATGAAAGAATACACACTGGAGAGAAACCTTACGTTTGTCCTGTCTGCAGCAAAGCCTTCAATCAAAGGGTTGTTTTACGTGAACATGTTCGTGCTCATCATTCTGGTGCTGAAGGCAGAGGTCGAACATTTGAGTGCATTGTTTGTGGTGAAATATTTAGTGAATCACTGGAGCTTTGTGCTCATTTGGTTATGCACAGCGATGAAAACACAGCGAAACATAGGTTGCCTAATACTAGCACCCGAAAATATAATAGAAGAAGGAAGCCTCCTAATGTCAATCTTAGTGTTTTATCTTCTGAAGAATCTGATTCGGGACAGGATTTTTTGGCAAAAACAGCCCGAAAAAAAGTTAAACCTTCTGAATCTATTAACGAAGCAAAGGGTACTGAGTTATTGGTGGGAGATGGAAGGGCGAGAATTTTACGTTCTTGTAAAAGAGGAATTAAAGGTCAAAATAAGAGATTTTTGAAGGGTAGGGGTAAAGCTACCCGTTTGATGAACAGCGCGAGTTATGCATCGAAGTACGTAGTAACGCCAACTGATGTTAATAATGACAAAGAGTTTGTTCAAGGTAGTTCTTCAAGGGTTCGACCGCGAACGCCTAACGTTACTGATTCTCAGAGTTTGAGAGGAGAGCCGAAATACCAAATAACTAACTATTCCAATCACAAGAATAAGCCGTTCCTAATTTCTAGTGAACTAATTAAAAAGGAACCAGATATTCTTGAGTCACAATATATTAATGGAATGGATACTAGCGCCATGTTCGATGTTGGGCATGGTGTTCCTATAGGAACCTGTATAGATGATGATATTGGTGTAGAACTCAAGTTGGAAGTGAGAACCAGTGAATCAGAAGATTTATCAGTACCAACCAACACAGAATCCATAATACCTGATATAAAGGTAGAAACAACGGAATTAGTGTCTTGTGAAATCTGTTATGAAACTTTTTCAGCAAGATCAGACTTGTTAAAACACATACAGGTCCATATATAG
- Protein Sequence
- MANSIEENFNLNLEWIPVEDIGEGIGTIDKDCIVIPSSPCYQKVELEDDENFPVTQGLIEIEVTEEEVVAGDWNIPDGRSSQTKRVKKPSNIGQSFSLPRDDDPVCHLISEAGDVSTTVPLLEGQDEYFRLHPYPCDFCSRRFSKKSMLSSHMLTHQLEEFHRCSVCGIQYRRKLELVEHMKIHSVSSMNQSSVFGSDYGSGPQSELKKVKKKSSKKKGKWQDHFALPSVSFNKKVNSELGQIFNINKSLTSPNEKFIDIPIKTELSSDEDFTLCGANGEKFPVLDPSRPYVCQHCGVGFARQKALNSHTMIHVGDSAYECEKCHDMFQSEEHLRQHKFRKHIRIYSNNKKSVDDDDKLKPFKCDQCDLSFSWYNQLKRHQRNQHAENRYNEEKLICNLCNVSFKTENSFLIHKEVHKASTEIYSCTTCGEEFCDADEVELHMKVKHDCPHLCHSCGSAYKDSKALRKHLLTHLDQPKSYHCPTCNRLFHNRGKLKKHVEAAHDGNQIGECGECGQKFPDASCLAIHRQSVHGTGRLFPCTQCGKTFTSRSSQQIHVRVHTGEKPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCPVCSKAFNQRVVLREHVRAHHSGAEGRGRTFECIVCGEIFSESLELCAHLVMHSDENTAKHRLPNTSTRKYNRRRKPPNVNLSVLSSEESDSGQDFLAKTARKKVKPSESINEAKGTELLVGDGRARILRSCKRGIKGQNKRFLKGRGKATRLMNSASYASKYVVTPTDVNNDKEFVQGSSSRVRPRTPNVTDSQSLRGEPKYQITNYSNHKNKPFLISSELIKKEPDILESQYINGMDTSAMFDVGHGVPIGTCIDDDIGVELKLEVRTSESEDLSVPTNTESIIPDIKVETTELVSCEICYETFSARSDLLKHIQVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -