Hlin061628.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hermatobates lingyangjiaoensis
Gene Symbol
-
Assembly
GCA_026182355.1
Location
JAPFBL010000016.1:1320767-1340840[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.23 1.1e+02 5.5 0.2 1 23 293 315 293 315 0.90
2 12 8.9e-06 0.0041 19.4 1.6 1 23 323 345 323 345 0.99
3 12 0.0014 0.64 12.5 1.1 1 23 352 374 352 374 0.97
4 12 7.7e-07 0.00036 22.7 1.7 1 23 380 402 380 402 0.99
5 12 1.6e-06 0.00072 21.8 0.4 1 23 409 431 409 431 0.99
6 12 4.9e-06 0.0023 20.2 1.1 1 19 437 455 437 459 0.93
7 12 1.1e-05 0.005 19.1 0.3 1 23 465 487 465 487 0.98
8 12 3.1e-06 0.0014 20.9 0.8 1 23 493 516 493 516 0.96
9 12 4.5e-06 0.0021 20.3 0.3 1 23 522 545 522 545 0.96
10 12 2.8e-06 0.0013 21.0 2.3 1 23 551 573 551 573 0.99
11 12 5.2e-06 0.0024 20.1 0.5 1 23 579 601 579 601 0.97
12 12 0.00015 0.072 15.5 0.1 1 23 607 631 607 631 0.92

Sequence Information

Coding Sequence
ATGACTGCTGACGCTGATAAAGGTAACGTAGTTTGTCTGATATGCAACGCTAGTATTGGTGTGTCGACTAGGAATATTTGCCCGATCTTCAAGTACAACGTAACTTCATCAGAACAACCTGTAGCTAATATTTTAAGTGTTATTCTTGGCCAAGAAGTAAGAAGAGAAGTTGTACATAGTGAAATAATATGCAAGAAATGTTATAAACTGTGTAACGAAGTTGACGAACTCCAAGAACGTTTAGCTGAAATCAAGATTGAAATTAATAACTATTACCAAAGAACCTTAAGGAAATTAGAAGGGATTCAGGATGAAGATGATGACCCTTCAACAGGGCAAGTCATAATTCTGTCAAGAAATAAAGTTAATCCTCCCTCAGCAACCCCTGGTAAAAGAGGGCGACCAAGAAAACATCCGCTTCCTGAAACAGCTGTCGAACCCAGACCTCCACCGCCTCCTAAACCTAACGGAACCGAGGAAATAATTGTGGGTGAAAGTGAAGAAGAAGAGGAAGACCCGAGAGGAGTGGGACTTGACGATGAAAACGACAGTGACTACATTCCAGAAGTGGAGACTGTAAGAGGCGTTCGGAGGGTGGACGACCCGCTCTTATCTGACGGAGTAAGAATCAAATTGGAAGTGGTCGACGACGATGATGACGACATCCCGGACGAAGACGAGGACGGCCACAAGAAGAAGTTGTCGGGCAAGAAGAGGCAAGCTGCTTCTTCAGAACTGCCTTCCATCATACCTCAGATGATAGTTAGCCGGTCAGACAAGTTGTACACTTGTCTGCTGTGCTCTGCAGATAACAAAGTGCAAGGCGAAGCGAAGGCGATAACACTTCACATGAAGTCAGAACATAATATCCGACTGTACATCTGCGACATGTGTGGAGTGGAGTTCCTTAAGCGAAGTGAAATGTCTGCTCATTTCGATCAACACGTAGCCAACGAAGAAGGAGACTTTCAGTGTGATATCTGCAACAGGATATTCTCCAATCTCCGCCTTTTTAGGGTTCACAAGAGAATGCACATGCCCCAGGCGAAGAATCATATTTGTGAAACTTGTGGCAAGGGATTCTTGTCTCGTAACATGCTGGAAGAACATTACAAcacacacactggcaacaggccgtacaagtgcagtgaatgcggcaaggacttcgcctctaagtacacgttcaaggcgcacgagaagactcacacggaccggccgcgacctttcaagtgtggtcagtgtggcaaaggcttcatcacagaacagAACCTGGTGCAGCACGAGAGAACGCATTCTGCCTCGAGGAACTTCACCTGTCAAGTCTGTGGAAAGTCGTTTAGTTCACCGAGGAATCTTGAAGTACACTGCGTcatccacactggctacaagcccttcacttgccgagtgtgtggtaaggcgtttgccaggaagccagagatcagggatcatgaacgaactcatactggtgaaaagccttaccagtgtgaattctgcggagcaacttttggACAAAGAAGTaatctgcagagccacaagagagccactcactacgatgataagaggtatcagtgtgtggattgtggaaaagcattcaaaagacggcgactgctggattaccacataaaggcagctcacacgggcgagaggcctttcaagtgccaagtgtgtggagctactttcatttaccccgaacacttcaagaaacacaggagaatacacaccggcgagaagccctaccagtgcgaggtgtgtggcaaggcgtttaacagcagagacaaccgcaatgctcatcggtttgtgcacagtgacaagaagccctacgagtgccttgtctgcggaatgggcttcatgaggaaacctcaactctacaatcatatgAACGTTCAGGGTCATGTTAACGACACCATCGTGGTGAACCAGCCCAGACTGACGACGGAGGAAGATCTTCTGCCTACATCTGCAGATGGGGTTGAAATGGCAATTATTACCGACCATAATAATCAGAAGTTCATCCACGCCGACCAGGTGACGAGCTACAGCGACCCCTGGGGGTCGCTACCGATTACTTTGAGAAACCCTGATATAAACAATCGTAATAAAGTAAAGACATGGATCCAGGGTAGCCTGTCGCTTGGGTGCTCGCCGATGACAGTAGTGAATATTGTGGACGACATTTCCCGAGAGGCTGATGGAGACACAAAAATGTTTATAAGTGAATTAAAAGAGCATGTTATCATTCAGCAAAAGGATCCCCACCAAGACGGTGTGGGTGACGAGGAACATCACTACAATGAGGTCGGCCATCTCATCATTGATGGCCAGGAAACACTGGAGCTGGAAGGTGAAGGAGGCACGGCGCTGGTCGTGAGAGGCAGTGACTTGGACGGCACTCACCAAAGCACGGATGGGCCTGTGCACCTGGTGCAGATCAGCATCCCTGACTCGGACCAGACTGCCTGGTTCAATCTGGTGCAGCAGTAG
Protein Sequence
MTADADKGNVVCLICNASIGVSTRNICPIFKYNVTSSEQPVANILSVILGQEVRREVVHSEIICKKCYKLCNEVDELQERLAEIKIEINNYYQRTLRKLEGIQDEDDDPSTGQVIILSRNKVNPPSATPGKRGRPRKHPLPETAVEPRPPPPPKPNGTEEIIVGESEEEEEDPRGVGLDDENDSDYIPEVETVRGVRRVDDPLLSDGVRIKLEVVDDDDDDIPDEDEDGHKKKLSGKKRQAASSELPSIIPQMIVSRSDKLYTCLLCSADNKVQGEAKAITLHMKSEHNIRLYICDMCGVEFLKRSEMSAHFDQHVANEEGDFQCDICNRIFSNLRLFRVHKRMHMPQAKNHICETCGKGFLSRNMLEEHYNTHTGNRPYKCSECGKDFASKYTFKAHEKTHTDRPRPFKCGQCGKGFITEQNLVQHERTHSASRNFTCQVCGKSFSSPRNLEVHCVIHTGYKPFTCRVCGKAFARKPEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCVDCGKAFKRRRLLDYHIKAAHTGERPFKCQVCGATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPQLYNHMNVQGHVNDTIVVNQPRLTTEEDLLPTSADGVEMAIITDHNNQKFIHADQVTSYSDPWGSLPITLRNPDINNRNKVKTWIQGSLSLGCSPMTVVNIVDDISREADGDTKMFISELKEHVIIQQKDPHQDGVGDEEHHYNEVGHLIIDGQETLELEGEGGTALVVRGSDLDGTHQSTDGPVHLVQISIPDSDQTAWFNLVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-