Basic Information

Transcription Factor Domain

TF Family: SAND
Domain: SAND domain
PFAM: PF01342
TF Group: Other Alpha-Helix Group
Description: The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0052 1.9e+02 3.8 0.0 56 72 3 20 1 23 0.86

2 6 0.0016 58 5.4 0.0 51 72 28 50 22 53 0.83

3 6 0.00018 6.6 8.4 0.2 23 72 57 110 52 113 0.70

4 6 0.00012 4.3 9.0 0.2 18 72 112 170 111 174 0.77

5 6 0.00018 6.6 8.4 0.2 23 72 147 200 142 204 0.71

6 6 0.00012 4.4 9.0 0.2 18 72 172 230 171 233 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0052	1.9e+02	3.8	0.0	56	72	3	20	1	23	0.86
2	6	0.0016	58	5.4	0.0	51	72	28	50	22	53	0.83
3	6	0.00018	6.6	8.4	0.2	23	72	57	110	52	113	0.70
4	6	0.00012	4.3	9.0	0.2	18	72	112	170	111	174	0.77
5	6	0.00018	6.6	8.4	0.2	23	72	147	200	142	204	0.71
6	6	0.00012	4.4	9.0	0.2	18	72	172	230	171	233	0.77

Coding Sequence: ATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTGATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTGATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTAATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTGATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTGATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTAATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTGATATGGGATGGAAATCACAAGATATAAGCTGTCGAGGTGTTTCACTCTCCACCTTACTACAGGTGCTCCTAAAAAACACACTGGAGAGTGATATGGGATGGAAATCACAAGATTAA
Protein Sequence: MGWKSQDISCRGVSLSTLLQVLLKNTLESDMGWKSQDISCRGVSLSTLLQVLLKNTLESDMGWKSQDISCRGVSLSTLLQVLLKNTLESNMGWKSQDISCRGVSLSTLLQVLLKNTLESDMGWKSQDISCRGVSLSTLLQVLLKNTLESDMGWKSQDISCRGVSLSTLLQVLLKNTLESNMGWKSQDISCRGVSLSTLLQVLLKNTLESDMGWKSQDISCRGVSLSTLLQVLLKNTLESDMGWKSQD

Sequence clustering based on sequence similarity using MMseqs2