Hlin046224.1
Basic Information
- Gene Symbol
- bab2
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000883.1:5796554-5805907[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-09 1.5e-05 26.6 0.0 3 39 275 310 273 315 0.84
Sequence Information
- Coding Sequence
- ATGGCTGGTAAAGAAACCcagcagttttgtgttcgttggaacagttaccaaagtaatctccagtcggcatttccaaaactattatcatgtgaacattttgtcgatgttactttggcttgtgagtcgaggatggttaagtgccataaagttgtattgagtgcttgtagtgcttattttgaaaagttgctggttcagaatccttgccagcaccctattatatttatgaaggacatgaagttttgggaagtgcaagcattggttgattttatgtataaaggtgaagttaatgttactcaggatgagttaggaactcttcttaaagctgctgaagctcttgaagttaggggactTTGTGGTCAACAACAGGGTCTTGCTGATAAATTAGCCCTACCTAGAGACACGGTCATGGCAGGGGAGAAGGCAAGGAAAGTCGAAGCAGTTGTTAAAGAAGAGCATCCCACCAATCAATCCTCTGAAGCACCTCAAAACTCCTCCGTAAATCCTACATCACCAGACCAATTCAGACCTTCCCAATCCACTCCTCTTTCTACGGTTAAACAAGAAACTAAAATATCTGACAACGGCCTGTTCGACGATTTAGACGATGATTTCTATCAGGATGACAATTCACTGCAGATTGACGAAACTGGCTCAGCTTATTCTCTTCCTGGTCCCTCCACTCAACTCGACTCTAGTCCTGACACTGGCCCATGGCACTTAAATAATGGATATCCAAGCGTGATTCTTACTGAACCGAACTACAGCAGTCCATCTCCGAGCAATGAAACACCAGGAAAAGTGCAGAGAATAAGGCGATCTGATGCGGAATTATTGAACGCGGCTGATTCGATATGTAAAGGAATGACTTTTCAGAAAGCTTCTCAGGTCTTTAACATCCCAATGTCAACAATTAGATTTTACATGGCTAGAAAAGGAATGCTTCCAAGCAGGCGTAGAGGACGAAGGATAAGTCAGACAACGGAACCACAAGTGGGTCAGGGAGGATTACAAATGCACAGCAGTCCCAGCGGCCCTCCACCTCCTCCCTCCATGATGTCCATGCAGCAAATGACAGCAGCCGCCTCACACCTCCACCAACCGCAGCCACCCACGCCCCAGCAGCCCCCCACTCCCACTCCCGTCCAGCTCCCTAATCCCTTTTACTGA
- Protein Sequence
- MAGKETQQFCVRWNSYQSNLQSAFPKLLSCEHFVDVTLACESRMVKCHKVVLSACSAYFEKLLVQNPCQHPIIFMKDMKFWEVQALVDFMYKGEVNVTQDELGTLLKAAEALEVRGLCGQQQGLADKLALPRDTVMAGEKARKVEAVVKEEHPTNQSSEAPQNSSVNPTSPDQFRPSQSTPLSTVKQETKISDNGLFDDLDDDFYQDDNSLQIDETGSAYSLPGPSTQLDSSPDTGPWHLNNGYPSVILTEPNYSSPSPSNETPGKVQRIRRSDAELLNAADSICKGMTFQKASQVFNIPMSTIRFYMARKGMLPSRRRGRRISQTTEPQVGQGGLQMHSSPSGPPPPPSMMSMQQMTAAASHLHQPQPPTPQQPPTPTPVQLPNPFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792996;
- 90% Identity
- iTF_00792996;
- 80% Identity
- iTF_00792996;