Hlin045385.1
Basic Information
- Gene Symbol
- bab1
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000084.1:20322854-20334669[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-14 1.5e-10 42.6 0.0 3 45 344 386 342 386 0.92
Sequence Information
- Coding Sequence
- ATGTCCGCACctcaacaatattgtcttagatggaacaatcatagatcaaatctgttaacagttttcgatcagttattgcagaatgaagcttttacagatgttactttagcttgtgagggaggaacttctgtcaagtgccataagatggtattagcagcatgctcctcatactttcagtgccttttcacagaattgccttgtagacatccagtggttgttttaaaagatattggatatggtgaaatgaaagcaattttagaatacatgtacagaggtgaagtcaatgtggcccaagatcagttagctgctcttctcaaagtagcggaggctttgaaagtgaagggattggtagaagaaaATGGTAGTGTACCCCAACTAAAAACTTCAGAGGAAGATAGAAATGCCATTTCTACTTCTTCCATGGCAGGACCTCCAAGTAGTAGCGTCAAAGAGTCTCCTCCTCATTCATCAACTGGTCAACCATATTCCAGATGGCCATATTCAAAATCCGAAGAACGAAATAGGATAAGTTTACCAATGTGGGGAGGACTTCCTCTTAATACTCCACCACCTCCTAATAGTCCATACTCTTCAACAGCCCTTAACAGATGTTATGAAGCTATTACAGCAGACATGCCCCCTCTGAGACGCAAGAAACTCTCAAGCCTTCTCATGAGCCGAGACACGCCCATACTTCGCACTGTTCTGGGACAGGGCCAAGCCGATTCTTCTGGACCAGTTCCTCTCATCTGTCGACCTGATAGCAATGAACATGGCAATATTTTTCCTTTTACTAATGGTTCTACTCCGGAGTCAAGGAATGTGAAACAAGAATCTACATCTGAGGAACCTTCTCCTTACACGGATATTTCAAACGTCGACGAGGAAGAAAGGCAGAATAAGTTTTCTTTGCATTCATCATCGCCTCAGCCTTTGTATAGTGAAAATAAAGAAGGTGTATTATCAGGAATCGCTACATATGTTCCAACACCCAAACCGGAATGGAAACGATACAAGCAGTACACGAGGAATGATATAATGTCAGCTATTGAAGCCGTAAGGAATGGTATGAGTGCATTACAAGCCTCCCGTAAATTTGGTGTACCTTCTCGAACTCTTTATGATAAAGTGAAGAAACTTGGTATCACAACTAGTAGGCCATTTAGGAGAAGTTCGAATAGCAATGGAAGTGCGGCCTTTCCTTACAGCTTAAGTGGCACTGGTTCAATGGTTTATGGAAACGTAAAAGAAGAAAGTTATTCCTCTGGTGTAATGGAACATGGATTTTTACATCATGCTTTGGAAGCTCATAACATAAAAAGAGAAGATATTGAAAGGGAAGCCATGGTTGCGTTAGTAGCAGCTTCAAATATTGAGACTAACAGTGGAGAACTTCCCAGTCCAAGAAATAACGAACGATCTCAAAGCCCGAATTTGATCAAGTATGCCCATCCGAACAGTGTAAGCCCTACATCACCCCATCCTCTAGATGATGAATCCAACCAAGTTGAAGATTTGTCAGTGACTCGTAAGACTGAAACCTCAACTACTTCCAGAGTCATTATGCCTCCAATGAGTCAGTCATCAAACATGATCACAACAGGTTCTAGTAACACTCAAGAGAACACTGATTAG
- Protein Sequence
- MSAPQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTLACEGGTSVKCHKMVLAACSSYFQCLFTELPCRHPVVVLKDIGYGEMKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENGSVPQLKTSEEDRNAISTSSMAGPPSSSVKESPPHSSTGQPYSRWPYSKSEERNRISLPMWGGLPLNTPPPPNSPYSSTALNRCYEAITADMPPLRRKKLSSLLMSRDTPILRTVLGQGQADSSGPVPLICRPDSNEHGNIFPFTNGSTPESRNVKQESTSEEPSPYTDISNVDEEERQNKFSLHSSSPQPLYSENKEGVLSGIATYVPTPKPEWKRYKQYTRNDIMSAIEAVRNGMSALQASRKFGVPSRTLYDKVKKLGITTSRPFRRSSNSNGSAAFPYSLSGTGSMVYGNVKEESYSSGVMEHGFLHHALEAHNIKREDIEREAMVALVAASNIETNSGELPSPRNNERSQSPNLIKYAHPNSVSPTSPHPLDDESNQVEDLSVTRKTETSTTSRVIMPPMSQSSNMITTGSSNTQENTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792993;
- 90% Identity
- iTF_00792993;
- 80% Identity
- iTF_00792993;