Hlin076784.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000374.1:226284-251268[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-18 2e-14 55.0 0.0 2 43 808 850 807 852 0.96 2 2 5 7.3e+04 -6.7 3.6 4 23 861 879 861 880 0.76
Sequence Information
- Coding Sequence
- ATGAGTCGGCCTTCGCTTGAGGTTACTGAAGAAGGCATTGAAAAGGCGGGGGTAAACGATTGCTACACCATAACACTCATCCTCAGACGGCCTTCGCTTGAGGTTCCTGAAGAAGCCATTGAAAAGGCGGGGGTAAACGATTGTTACACTATAACACTCATCCTCAGTCCGCCTTCGCTTGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGAGTAAACGATTGTTACACTATAACACTCATCCTCAGTCGGCCTTCGCTTGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGAGTAAACGATTGTTACACTATAACACTCATTCTCAGACGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAGAAGCGGAAGCCATTGAAAAGGCGGGGGTAAACGATTGCTACACTATAACACTCATCCTCAGTCGGCCTTCACTCGAGGTTACTGAAGAAGGCATTGAAAATGCGGGGGTAAACGATTTCTACGCTATAACACTCATCCTCAGTCGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGGGTAAACGATTGTTACACTATAACACTCATCCTTAGACGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGGGTAAACGATTGCTACACTATAACACTCATCCTCAGTCGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAATGGCGGGGGTAAACGATTGTTACACTATAACACTCATTCTCAGACGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAGAAGCGGACGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAGAAGCGGGTTAACGTTTGTTACACTATAACACTCATCCTTAGACGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGGGTAAACGATTGCTACACTATAACACTCATCCTCAGTCGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAAATGCGGGGGTAAACGATTTCTACGCTATAACACTCATCCTCAGTCGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGGGTAAACGATTGTTACACTATAACACTCATCCTTAGACGGCCTTCGTTTGAGGTTACTGAAGAAGCCTTTGAAAAGGCGGGAGTAAACGATTGCTACACTATAACACTCATCCTCAGTCGGCCTTCACTCGAGGTTACTGAAGAAGCCATTGAAAAGGCGGGGGTAAACGATTGCTACAATATAACACTCATCCTTAGACGGCCTTCACTCGAGGTTACTGAAGAAGCCAATGAAAATGCGGGCGTAAACGATTTCTACGCTATAGCACTCATCCTCAGAGGTTACCCCAGCATGTCGCGAAGCACCTACCTTTGTGCAGCAAAGTTGCCTTCCAGTCAGTCAGCAGGTGCAACGGTTTCTTCCTCTTTGCAGAATCTGCACAAACCATCATTGATAATGTCCATTCAGGCTCCCTACGTTTTGGGACAAAGTAACTTCCTTTCTCCTTCTTCGGGTCCTCAGGGGAAAATCCCTGAAGCTCTATCGGTGATATTTTATCCGCTCCGGCAGAGTACCGCATACCGGAGTAACGCTATTTACTCAAGGGGGTTGTCTGatatatatatatatatatatatatatatatatatcattactgacggtctcctcctttcctttctttctctctctctctctctctctctctctctctctccctccctttttccctttcctttcctctttttctctctccccctctctgtactttcctctttctctttcTCCCTCTCCTTTTCTCTCTCTTTCCCTCCACTTTCTCTGACCTTTCCCCCCTCTCTCCTTTCTCCCTTCCCCCTCCTTTCTCTCCTTTCCCCTCTCTCTTTCTCCCTCTCCTTTTCTGTTTCTCTCCCACTCCTTTCCTGTCTCTCTCCTCCTCTCCCTCTCTCACCCCTTTCTCTCCTTTCCTCTCTCTTTCTCCCTCTCCTTTTCTCTCTCTCTCTCTCTCTCCCCCCCTCTCTGTCCTTTCCTGTCGCTCTCCTCCTCTCCCTCTCTCACCCCTTTCTCTCCTTTCCTCTCTCTCTCCCTCCCCCCTCTCTGTCCTTTCCTCTCTCTCTCCCTCCCCCTCTGTGTCCTTTCCTGTCTTTCCTCCTCTCCCTCTCTCACCCCTTTCTCTCCTTTCCTCTCTCTATCtttctctctctctccctcctccccctctctCGGAATCCTTCAGAAGAAATATCAGATAGTAATATCAGATGGAGCTCGGGAGAAGAAGTTAAACCAAACCCTATACATTCACAATTACCTGTACAAGGATGGACCGATAGCAACGACTGGGAGCAGTGCCTTTGGGAACAGGCGATGAAAAAGAAAAGATCAGCCAATCCACAAGCCGAGGAAAACTTCATAGCTGCTTTGGAAGCAGTTAGAACAGGCCAGCTGGGGTTTTGCAAAGCAGCAAAGATGTATGGTGTAAACAATCGAACACTTTGGCTGGAATATAAAAGGCGAGGCTATCCTTTGATAAGACCTTCAACAAAGGCGAAATCTTTACAGCTGGCTGCTGCTGCTGCTGCAGCGGCGACAGGAGCTACAATGAATACTGCTGCATCATTCCGGCCTCCGGGAAGTGATTCGCTATCATCACAGACGACTACTAGCCTACCTGCTGCTGCTGCTGCTACTGCTACATCAGCGCCCTCTACTACTCGGTTACCTCAGAAATTCTCCGCAGAACCTCTTCCTCCTTACTACCTCTACACCCGGACCAGATTCTTACGAGGAACTCTTCTGCGTGAGGACGCCTATGCCATTCCTGCCCACTGTGAAATTAAAGTAGGGACTGCGAGCCCTCTCCAGGAAGGACGGTGGATGCGGCCAAGCGTGTTAAGAAACCGACGGGGAAAAGGTCTACATACACCCACATCAATAGAATTTACAAAAAACACCAACAACCAGTATCTAATGAAATCCACTAAGCCCATAGTGAACACCGAGTTCGACGAGGTATACTTCCAAGCCAGGACGCCAAGACCTTCATCCAACTCTATTGGAAAATTAAGTAGGGACTGCGAGCCCTCTCCCGGAGTGAAGGCTGAGGCAGCCGAGCAGACGGAGTGTGCTAAGGAGAAACGAACTCGAGTTCCAGGGGGGTTATCGGTCATCTGTTACTTTGTCGAGGAACTCGAGTTCCAGGGGGTCATTGACTTCTCGGGGTTATCGGTTATGTGTTACTTTGTCGAAGAACTCGAGTACCAGGGGTCATTACCTCTTCGGGGTTATCGCTCGTGTATTACTTTGCTGAGGAACTCGAGTGAACCAGAAAACAGCGGGCCTAAGTTGGGATCGAAACGTGGTCGACTTTTAATGCGTCAACCTCGAATCAAACGTGAAACAGAAGGCACTGAAGATGAAGGAACAACACCTCGAATTGAACGCCACCTTTCAGAGCCTTCCTCGCAACACCTTCAGGTGCCTCATATACTGCCCAAGCAGAACTCGAGTCCTCACCTGTCACCGCCTCAGCTGCACGTCACGCCCCCCACCCCCACATCGCCGCCTCTCCAGCGGGATGACCAGCACCGCCGGCCTCTCCCCCTATCAGCCCAGGCAAGCCAACTGACGCAATCTTTTATTTTAAAAAAAAAAATATCAATTCCTTCCTACAGGTCAACCCACTCCTTCTTCATACCAGACTCCTTCATCTTCATATCAGACTTCTCCTTCTTCAGATCTGACCCCTCCTTCTTCATACCAGACACCTTTAGATCATACTTCTCCTTCTTCAGATCAGACCCCTCCTTATTCATATCAGACCTCATTCTTCTTCATATCAGACTTCTTCTTCAGATCAGACCTCTCCAACTTCATACCAGACTCCTTCTTCAGATTAGATCCCTCCTTCTTCATACCACCCTTTCTTTAGATCATCGTACTTCTCCTTCTTCATACCAGACTCCTTCTTCAGATCTGATCCCTCCTTCTTTATACCGAACTCCTTCTTTATATCGTACTTCTCCTTCTTCATACCAGACCCCTTCTTCTTCATGTCAGACTTCTCCTTCTTCAGATCAGATTCCTCCTTCTTCATACCACCCTTTCTTTAGATCGTACTTCTCCTTCTTCATACCAGACTCCTTCTTCAGTTCTGATCCCTCCTTCTTCAGATCAGATCCCTCCAACTTAATGCCAAACTCCTTCTTCATAACAGACTGTTTCTTCTTCATAAAAGACTTCTCCTTCTTCCGTTTCTCTAATGATATTCTCATCCCTGATGACGTGTCATCATGTGCCAACAGCAGCAGTATTGTGATGTCTAGCAATGACAGCGAGTCATCCCGTGCATGCCACTGCCCCGTACTAAGGCCAGGACCAGCTCTTGGGTGTAACTTTTGTTGGAACACAATCGACAACCATGGAAGAATCCTCAGGAGAAAAACCAAATATCATTGTCCTGAATGTCAAACAAATCTCTGTATTGTTCCATGTTTTCAGGTATTATAG
- Protein Sequence
- MSRPSLEVTEEGIEKAGVNDCYTITLILRRPSLEVPEEAIEKAGVNDCYTITLILSPPSLEVTEEAIEKAGVNDCYTITLILSRPSLEVTEEAIEKAGVNDCYTITLILRRPSLEVTEEAIEEAEAIEKAGVNDCYTITLILSRPSLEVTEEGIENAGVNDFYAITLILSRPSLEVTEEAIEKAGVNDCYTITLILRRPSLEVTEEAIEKAGVNDCYTITLILSRPSLEVTEEAIEMAGVNDCYTITLILRRPSLEVTEEAIEEADGLHSRLLKKPLKKRVNVCYTITLILRRPSLEVTEEAIEKAGVNDCYTITLILSRPSLEVTEEAIENAGVNDFYAITLILSRPSLEVTEEAIEKAGVNDCYTITLILRRPSFEVTEEAFEKAGVNDCYTITLILSRPSLEVTEEAIEKAGVNDCYNITLILRRPSLEVTEEANENAGVNDFYAIALILRGYPSMSRSTYLCAAKLPSSQSAGATVSSSLQNLHKPSLIMSIQAPYVLGQSNFLSPSSGPQGKIPEALSVIFYPLRQSTAYRSNAIYSRGLSDIYIYIYIYIYIITDGLLLSFLSLSLSLSLSLSPSLFPFPFLFFSLPLSVLSSFSFSLSFSLSFPPLSLTFPPSLLSPFPLLSLLSPLSFSLSFSVSLPLLSCLSPPLPLSPLSLLSSLFLPLLFSLSLSLPPSLSFPVALLLSLSHPFLSFPLSLPPPSLSFPLSLPPPLCPFLSFLLSLSHPFLSFPLSIFLSLSLLPLSRNPSEEISDSNIRWSSGEEVKPNPIHSQLPVQGWTDSNDWEQCLWEQAMKKKRSANPQAEENFIAALEAVRTGQLGFCKAAKMYGVNNRTLWLEYKRRGYPLIRPSTKAKSLQLAAAAAAAATGATMNTAASFRPPGSDSLSSQTTTSLPAAAAATATSAPSTTRLPQKFSAEPLPPYYLYTRTRFLRGTLLREDAYAIPAHCEIKVGTASPLQEGRWMRPSVLRNRRGKGLHTPTSIEFTKNTNNQYLMKSTKPIVNTEFDEVYFQARTPRPSSNSIGKLSRDCEPSPGVKAEAAEQTECAKEKRTRVPGGLSVICYFVEELEFQGVIDFSGLSVMCYFVEELEYQGSLPLRGYRSCITLLRNSSEPENSGPKLGSKRGRLLMRQPRIKRETEGTEDEGTTPRIERHLSEPSSQHLQVPHILPKQNSSPHLSPPQLHVTPPTPTSPPLQRDDQHRRPLPLSAQASQLTQSFILKKKISIPSYRSTHSFFIPDSFIFISDFSFFRSDPSFFIPDTFRSYFSFFRSDPSLFISDLILLHIRLLLQIRPLQLHTRLLLQIRSLLLHTTLSLDHRTSPSSYQTPSSDLIPPSLYRTPSLYRTSPSSYQTPSSSCQTSPSSDQIPPSSYHPFFRSYFSFFIPDSFFSSDPSFFRSDPSNLMPNSFFITDCFFFIKDFSFFRFSNDILIPDDVSSCANSSSIVMSSNDSESSRACHCPVLRPGPALGCNFCWNTIDNHGRILRRKTKYHCPECQTNLCIVPCFQVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -