Hlin054854.1
Basic Information
- Gene Symbol
- retn
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010001617.1:7872599-7890102[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-16 3.5e-12 48.5 0.0 10 85 76 149 71 151 0.89
Sequence Information
- Coding Sequence
- ATGTCCATTGTCCTAATGTCCATTCAGGCTCCCTATGTTTCGGGAGAAAGTACTTCCTTTCTCCTTCTTCGGGATGGTCTTCTTCGGGTCCTCAGGTGCACATGTGGGAGGTTCCCACTAGTTAGCGCTTTTGGACCCTCTGCGCTTCTGGAGGATGGTCTCCAGACTTCCTTCTCCTTAAAGGGGAAAATCCCTGCAGCTCTATTGGTGGCATTTTgtccgctccggcagagcaccgcataccggaGCACTCCTATAAACAGACTTCCAATAATGGCCAAATCGGTGCTGGACCTTTTTGAGCTTTACAACCTTGTGATACAGAGGGGAGGCCTGGTGGACGTGATCAACAAGAAGCTGTGGCAGGAAATCATCAAAGGCCTCCACCTGCCTTCGTCCATCACCAGTGCCGCCTTTACCCTGCGCACCCATCTTCTTCGGGTCCTCAGGTGCACTTATGGGAGGTCGGATGCCATTAGTTATTGCTTTTGGACCCTCTGCGCTTCCGGAGGGTGGTCTCCGGACATCCTTCACCTTTCAGCGGAAAATCCCTAA
- Protein Sequence
- MSIVLMSIQAPYVSGESTSFLLLRDGLLRVLRCTCGRFPLVSAFGPSALLEDGLQTSFSLKGKIPAALLVAFCPLRQSTAYRSTPINRLPIMAKSVLDLFELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTHLLRVLRCTYGRSDAISYCFWTLCASGGWSPDILHLSAENP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -