Hlin039562.1
Basic Information
- Gene Symbol
- Arid5a
- Assembly
- GCA_026182355.1
- Location
- JAPFBL010000099.1:870350-890300[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-25 7.8e-21 76.2 0.0 1 89 68 154 68 154 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAAAGTGAAGATGATGACGACGATGAAGATGAAGAAGAGGATGACTCTTCTTCGGAAAGCGTCAGTTCAGAGTCTACCTCATCATCAGGCACTAAGCCAAAGGTATCTGTGAAGCCTCGCCTTAGGTGCACACTCCAAGTAGAGCCTTCATCGCCAAGTATTCTTGCCACTTCGCACTCGGCCAAGGTGTCCAGCGAAGAGAAAAAGTTCCTCACCACACTCTTCAACTTCATGCGCTCTAGAAACACTCCCATCGAGAGGGTACCTGTCATAGGATTTAAAGAAGTCAACTTGTTCAGACTTTATCGAAAAGTCAGCGACCTCGGAGGCTACAACAACGTGACAGGTTCCCGTCTGTGGAAGCACGTTTTCGAGACGACTGGAGGAGACCTTTCACACACCAGTGGTCCTATCCACTTTAAGAAGTACTACGAAAAGTTGCTGTTACCATATGAAAGGTGCTTCAGAAATCAAGCCTGGAGAAGTTCTGTCCAATCGATGGTTCCCATTCCTTCTTCACTCGCCTTGCCTCACCAGACCAGAATTGGGTCTATAAAGATTTGTCCTTTGCGCAACATGAGACTGAAGCCTGAGAAAGAGAACATCCCTGAGAGGAAGAGAAGGATGGTGGAGCAGAGCGGTGCAGCAAGTGTGACCATCATCAAAAAGGATGGACTGAAAGAGGAGGTTGTCCACCTGTTGTCTTCTCAGCCGCCCCACAAGGTGCATAGTGGACCAGTGAATAGGCTACACCCAGTGACTGTCAAGAAGCAAAAACTGGACATCCTTCGTGAAGGTGGCCTGGAAGTGACTCCCGTAGGAGTAAGCATCACACCAGTGATTCGGGAAAAACCCAAAACACCTCCCCCAGCACCAACAGACAACCAAGTGTCCATCACTGTCACTCCAGACATGAGCCATCTCATGTATCCTTGGGTTGAAGGGCCTTCTTATGGAGGAGGCTGTGCTGTTGGCCTTCCTGTCGAAACAGTCCTAGGCGGAGTACATGATCTGCGCACCAAGCCTCTTACAATCGGGTCAAACCTGGAGATCAGTCTAGTGCCAGCAAAAAAACCTACTCCACCTCCACCAGTGTCCTTCTACAAGGACGTCATCGCCTCTCAGGGGATCTTCAATCTGCTTCCCGACGGCTCCACCTCCATATCCCTTGTTGCTAAGTCCACGCCCACCTCCAAGTAG
- Protein Sequence
- MSESEDDDDDEDEEEDDSSSESVSSESTSSSGTKPKVSVKPRLRCTLQVEPSSPSILATSHSAKVSSEEKKFLTTLFNFMRSRNTPIERVPVIGFKEVNLFRLYRKVSDLGGYNNVTGSRLWKHVFETTGGDLSHTSGPIHFKKYYEKLLLPYERCFRNQAWRSSVQSMVPIPSSLALPHQTRIGSIKICPLRNMRLKPEKENIPERKRRMVEQSGAASVTIIKKDGLKEEVVHLLSSQPPHKVHSGPVNRLHPVTVKKQKLDILREGGLEVTPVGVSITPVIREKPKTPPPAPTDNQVSITVTPDMSHLMYPWVEGPSYGGGCAVGLPVETVLGGVHDLRTKPLTIGSNLEISLVPAKKPTPPPPVSFYKDVIASQGIFNLLPDGSTSISLVAKSTPTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -