Hmer022576.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638363.1:34786853-34806616[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.11 13 7.3 0.6 2 23 277 299 276 299 0.88 2 16 0.044 5.2 8.6 0.4 2 23 357 379 357 379 0.95 3 16 1.2 1.5e+02 4.1 3.5 1 21 385 405 385 410 0.93 4 16 5.2 6.1e+02 2.1 0.1 1 23 417 439 417 439 0.91 5 16 0.00058 0.068 14.5 4.6 1 23 497 520 497 520 0.96 6 16 0.031 3.7 9.1 2.8 2 23 527 549 526 549 0.95 7 16 0.001 0.12 13.8 1.1 1 21 654 674 654 675 0.94 8 16 0.0019 0.22 12.9 1.4 2 23 687 709 686 709 0.92 9 16 3 3.5e+02 2.9 1.7 1 23 712 735 712 735 0.95 10 16 0.074 8.7 7.9 0.9 3 23 742 762 740 762 0.96 11 16 0.18 22 6.7 0.5 1 23 766 789 766 789 0.96 12 16 0.13 15 7.2 0.5 2 23 796 818 795 818 0.94 13 16 0.026 3 9.4 0.4 2 23 827 849 826 849 0.95 14 16 2.7 3.2e+02 3.0 2.6 2 23 1003 1025 1002 1025 0.94 15 16 0.46 55 5.4 0.3 2 23 1032 1054 1031 1054 0.93 16 16 0.13 15 7.1 1.0 1 23 1067 1089 1067 1089 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGAGGGAAGTTTTGGTGGGAACCCTGTGTGACGCCATATTGTCTTCTTCCCGATACAATATGCGGAGAATGTTCGGAAAATGTAGAACATTTTTATGTGTTCATTAAAAACTGTTTACAAAACATTATCATATTAGAATCGCAATACGACATTCAGGAATCCTGCTTGaaatctaaacaaaaaaaggaCAAAAGTTGTTATGTtgattttaaacacaaaaaactCAATAAAGGAATCCAAACTGAGGACTACTTGGATGTATTAAGTGGgaaaaatataagttttgaAGGTTTTCGAGAGAATTTTCCTCTTAGTGCAACTTTTTTGGACCATCAAGACAcccttattaataaaaatgactctagatTGGTTGGATATGATATAGATTCCGATTCAAGCTTAGAAGAATATTCTAAAAACAATGGTGAAGttattttaaacgaaaaattaCAATCTAAAACACAAATAACACATTTGGTTAACGTTTTTACTAGTAAACCCGTCTTTCCAACAAACACTCAATGTTTCGATaataccgaaaataatttaatcagcGAAATTTCTCAAAGGAaagatttgaaaagaaaaaacgaatttattgaaACTTGCAAACCGAAAATTTATAAGGTTGATACTTCTAATCGAAGAAAAAATAAGGTACCAAAGAAGTTAGATGTTTGTGAAGAAACTCTAACTTTTCAAATTGATAAATCACTCAAATTAGAGAGTGAGTTCCAAACTAAGAATGTTGTTAATGAAGAAATTGAAACATTGCACAGTTTTAATAACCAAAACGAGAATCTGCTGCTATCGTTGCCACAAAGCTGTTTATTATGTGATACTCATTTTAATGGTTCTTCCGCACTTGCTTCGCATGTTTTTGAAACCCATGGTATTGACATGACCGAAGTAGTGTCTTCAGGCTCTGCCGAGTCTTTTCCTGAAAAAGCAAAGAAAAAGTTAccaaatttagtgaaaatctCAGACATAAAAAGGACTGAATCGTTAGATGACAATAATTCTTCCGATAGACAATtgcaacataaaaaaaatacgggTCCATCTTGTCCGAATTGTACTGGCGTTTTCACCAGTAAGCAAGATGTAATGATGCATCTAAAATTGAAGCACGCACAACTTGCAGGTTTTGTTTGTGGTATTTGTCTCCATCAGTGTTCATCTTTGATGAATCTAAAGTCCCACTTAGAAATTTGCTCACAGCACAATCAAATAAATGCCAAATATGTGTGTCAGGTGTGTCAATACGGAgatgataattttaaatggttAGAAAATCATGTCTTAGTACATGCATTCCTGCTGGAGGtttgtaaaaaacaaatgaaaatgtttgATCCTGAAGATTTTATAGATATTAACGAGAATACGGCTTACAAAGGTTTAAATTGCACAGAATGTGGACTCGACGAGTTCTTTTCATTTAAAGAATTCAGCGCCCATAGAAGAaataaacacaatatttttcaCTGTGATCTTTGCAACAAGTTTTATGGAAGAAATTCTCACTTATGGAAGCACGTAAACCGGCTTCATAAAGGTCATCCGAGTATTACGTGTCAGCTTTGTTATAAAACATCTGCCTCCAAGTATCACCTTTCacaacattttaacaaaattcatCTTGCCAAAAGTGGCAAAAAGTCTGGCAGTGCAGAATCCATcgagaaagaaaataaagacaTTTCTGTTAATAAATTCTCTACATATGACTTTTTATCAGTAAGAGAGAATTTTTTAAAGCAAGAGGTTGATAACAGTGATGTAGAAGAAAATTCTGATCAAGATCAAGATGAATTAGTTATTAAAGAAGAATATGACGGGGATGCTGCAATAAAGGAAGAACCTCCTTTGGCTCCTAAAGAAATTGATTCATCTCATGATTTGTACAACAATATCATAACCAATTATACTCCTTTATTAAACGAGGGAGATTTCAAATGTCCTAAATGTTCAAAAGGTTTCATTAAGAAACTTTTACTCAAAAAGCACGAAAAGAATTGCAGACCCAGGATGCAAAAAGACTTGCTGACCAGATGCAAAACATGCTCGAGGATTTTCAAAGACCGGCAAAGTTTAGCTAAACATTTAGTTAATTATCATTCTGAGTATACATGTgaaatttgtttacaaaaagTTCAGAGCAAGTGTGAAATTGTATCACATATCAGATTTCGCCATCCGGGTTGTCCCTTGTTTTGCAGAATATGTAAAAACATACTAAGAACAAAGAGCGACATGCAGGAACATGTCAGAAATCACTTTGATTCCCACGTATGTCAATTCTGCGGCGATTCGTTACCGAGCAAAATTAAGCTGAAGATGCATATATTGAGCTTACACCGAAAAATCTTGAGTTTATCTTGTGGTATTTGCCTTAAGCTCTTTGAAAATCAGCACGTACTTCGAGATCACGTGAAACTGGTACACAAAGATCAGCTTGCTCAATATACTTCTTGTCCCGTTTGTGGTAAAAATTACGGTTCAAAATGGAAAACTTATGATCACATCAATAAATCTCACGGAAGGATATTTAGGGCTTGTAAAACTTGCTTGGAAATTTTCGATAATGATGCCCAATTTCAAGCGCATTGCGACGTTACCGGCCATGGTGGCCAAATAGGAAACGCAAGCGCTACTGCGCTAAGAAATACCATTATGGCTCACATTAAGACTGCTCTGATTGCCAATAACGAAGAGGACACTATCACAGATGATGACGATAGAAACAGTGATAGCGATCTTGATAATGAACCGGAGCATTACGAAGAAGATAGGAAGTTCTATTTGTTGGAGAAGCGTCTGTTGGGCAAAGCATTAACTGATGATAAAAATGATGTCAAATCAAAACAGCCCATTACCAAAAAATCGAAATCATCTAAAAAAGGAAGTGGTTCGTCTACATTGAAGaAAGAGGATCCTGATCATCCGCAAACAAACTCTTCAAAACGAACGGTATATGTCAACAGCAATGACCCATCCTATTGCGAGATTTGTTACAAAACATGGCCAGCTAAGAAACACCTTTGGCAACATTACATCCGTTGCCATAAGAGCATAGCAGCTACTGTATGTGGCATATGTTTGAAAACCAATGACGATTATGAAACGTTACAGAAACATCTGAGAGACAATCACCCGAAACTTCTGCATGGTCAGGGGTTCGGCTCCaactttatttgtaaaatttgtggTAGATACCATAATGCAAGTTCTAAATTGAGATTGCATATGGTTATCCATGAGAACTTCAATTGTAAGCTCATAGAAAGCGGTGATGCAGATAAGGGCTCTACTAACGGATTCCAAGTTCTGAAGGAAGAAGAGCCTCAGTTTGGTGATACCATTAATTACGATAGTTTGATAGAACAAGTGGAATGTTCTTCACAATCTGATAATGAAGAATTTGACAATGAAGAAATACGGATGAAGCAGGAAAATTCTTCATCTTCAGATGATGAGGGGGGGGAGGCCAGTGAAGAGGATTCTGCGCAAAGTTGGGATCAAACAGATGTAAAATTGCAAATTCCACCTTCCAAAGAACCTCCAGCACAACGTCAAGAATATACATCTTCTAGTGAAGCAACCACATCGAGTTACGGTAAAAGCAGATCCAGTTCCTCAGAAGAAGAGTGCTCACAGGAATCGAGGTCGAGGTCGTCACAATCACGGAATAAAGTTCCTCCCAATTATGATTCTTTAAATCAATTGGAGACTGAAGATGGCGTGAATGCCAGTAACAGCAATATGTTCGATAGGAAGCACGAGGAACTTGATTCAGCTATAAAATCCATTAGTTATGATGAATGTGTCGCACCAGTTGATATGAATGTTGTCGATGAATATTGCGAAATGCAGAGTAATTGTTTGAATGAGAATGAAATTGAGTCGGCAGTTGATagcatactttaa
- Protein Sequence
- MERGKFWWEPCVTPYCLLPDTICGECSENVEHFYVFIKNCLQNIIILESQYDIQESCLKSKQKKDKSCYVDFKHKKLNKGIQTEDYLDVLSGKNISFEGFRENFPLSATFLDHQDTLINKNDSRLVGYDIDSDSSLEEYSKNNGEVILNEKLQSKTQITHLVNVFTSKPVFPTNTQCFDNTENNLISEISQRKDLKRKNEFIETCKPKIYKVDTSNRRKNKVPKKLDVCEETLTFQIDKSLKLESEFQTKNVVNEEIETLHSFNNQNENLLLSLPQSCLLCDTHFNGSSALASHVFETHGIDMTEVVSSGSAESFPEKAKKKLPNLVKISDIKRTESLDDNNSSDRQLQHKKNTGPSCPNCTGVFTSKQDVMMHLKLKHAQLAGFVCGICLHQCSSLMNLKSHLEICSQHNQINAKYVCQVCQYGDDNFKWLENHVLVHAFLLEVCKKQMKMFDPEDFIDINENTAYKGLNCTECGLDEFFSFKEFSAHRRNKHNIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLAKSGKKSGSAESIEKENKDISVNKFSTYDFLSVRENFLKQEVDNSDVEENSDQDQDELVIKEEYDGDAAIKEEPPLAPKEIDSSHDLYNNIITNYTPLLNEGDFKCPKCSKGFIKKLLLKKHEKNCRPRMQKDLLTRCKTCSRIFKDRQSLAKHLVNYHSEYTCEICLQKVQSKCEIVSHIRFRHPGCPLFCRICKNILRTKSDMQEHVRNHFDSHVCQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHVLRDHVKLVHKDQLAQYTSCPVCGKNYGSKWKTYDHINKSHGRIFRACKTCLEIFDNDAQFQAHCDVTGHGGQIGNASATALRNTIMAHIKTALIANNEEDTITDDDDRNSDSDLDNEPEHYEEDRKFYLLEKRLLGKALTDDKNDVKSKQPITKKSKSSKKGSGSSTLKKEDPDHPQTNSSKRTVYVNSNDPSYCEICYKTWPAKKHLWQHYIRCHKSIAATVCGICLKTNDDYETLQKHLRDNHPKLLHGQGFGSNFICKICGRYHNASSKLRLHMVIHENFNCKLIESGDADKGSTNGFQVLKEEEPQFGDTINYDSLIEQVECSSQSDNEEFDNEEIRMKQENSSSSDDEGGEASEEDSAQSWDQTDVKLQIPPSKEPPAQRQEYTSSSEATTSSYGKSRSSSSEEECSQESRSRSSQSRNKVPPNYDSLNQLETEDGVNASNSNMFDRKHEELDSAIKSISYDECVAPVDMNVVDEYCEMQSNCLNENEIESAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -