Basic Information

Insect: Hermaeophaga mercurialis
Gene Symbol: PRDM10
Assembly: GCA_951812935.1
Location: OX638359.1:47244719-47247628[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.11 13 7.3 0.4 2 23 199 220 198 220 0.96

2 11 0.003 0.35 12.3 0.6 3 23 229 250 228 250 0.97

3 11 0.00022 0.026 15.8 0.3 1 23 356 378 356 378 0.98

4 11 0.00012 0.014 16.7 2.6 1 20 382 401 382 403 0.93

5 11 0.00087 0.1 14.0 3.8 1 23 408 431 408 431 0.98

6 11 2.3e-05 0.0027 19.0 1.8 1 23 449 471 449 471 0.97

7 11 7.3e-05 0.0086 17.4 2.0 1 23 477 499 477 499 0.98

8 11 8.6e-06 0.001 20.3 0.8 2 23 505 527 504 527 0.94

9 11 0.0083 0.98 10.9 1.8 3 21 534 552 533 554 0.94

10 11 2.8e-05 0.0033 18.7 3.2 1 23 559 582 559 582 0.97

11 11 1.2e-05 0.0014 19.9 1.2 1 23 599 622 599 622 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.11	13	7.3	0.4	2	23	199	220	198	220	0.96
2	11	0.003	0.35	12.3	0.6	3	23	229	250	228	250	0.97
3	11	0.00022	0.026	15.8	0.3	1	23	356	378	356	378	0.98
4	11	0.00012	0.014	16.7	2.6	1	20	382	401	382	403	0.93
5	11	0.00087	0.1	14.0	3.8	1	23	408	431	408	431	0.98
6	11	2.3e-05	0.0027	19.0	1.8	1	23	449	471	449	471	0.97
7	11	7.3e-05	0.0086	17.4	2.0	1	23	477	499	477	499	0.98
8	11	8.6e-06	0.001	20.3	0.8	2	23	505	527	504	527	0.94
9	11	0.0083	0.98	10.9	1.8	3	21	534	552	533	554	0.94
10	11	2.8e-05	0.0033	18.7	3.2	1	23	559	582	559	582	0.97
11	11	1.2e-05	0.0014	19.9	1.2	1	23	599	622	599	622	0.98

Sequence Information

Coding Sequence: ATGGAAATTTGTGGAATTTGTGGGGGCAACCATGAATCTATGGATTGTGacataatacaaattatttcacATATTCCTGACAAAACTATTCCTACAAGAGCCAAATTAACTTTACCCCAAggtttagaactgaaaaaaatgGCAGATAATAGTTATGATGTTGTCACAACATACGTTATCGGAAAAGGAACTCAATTTGGACCGTTACAAGCGAAAAAACTTTGCTCCCTCTTGCCCACTATTAGTTTTCCTTTGCGAGTATTTTACGAAACTGAAGAAAATTTGTCTGAATATTATCTAGATACAAGCGATGAAACTGAATGTAACTGGATGATGTTTATTAATTCTGCCACTGATTTTCAGGAacaaaatatagtctgttatcAGAATAATGaagatatttattatgttactGTTAAAGATATATGTGAAGGTGAAGCTTTAAAGGTATGGTATTCTCCTTATTATGCTACAAAGATGCAAAAAGATGTACTTAAGcctataattaataatagcaaagaaaatagaagaaatatggAATATATAGATAGTCTagttaaaaagaagaaaaatataactcCAAGAGAAATGTGGAGTTGTAAGTTCTGTGGCAAAATGGAAAGAAACATATCTGAGTTTGCTTTACACTTGTTAAAACATTATAGAGCCAAAATAGGAAGGTTTTGCCAATTATGTaatgtttctttttcaaaagtTCAGggtTATCAAAAACACATGAAAATTGTTCACGAAAGAGATTTAATAAATAGGCTTTCAATTCAATCAGAATCAAAATCAAATGTACAAAAAACAGATAAGGTTATCAAAGATTCCTTACAAAAGGAGAGTTACTTTGGTGGACCTCTTCTGTTAAATGAATTACTTAATGACAGTATGGATAACACGGGTCTGGTATTACCTCAGATAGATTTAATTGGCATGGAAAATCAAAACAACttgtttgaaaatgaaaatttgaactTAAACATGGAATCCATTCTTTCTGATGGTGTTAAagatttagataattttaattttgaattgattgataatgataatgaacaATTTATCTGTGATATTTGCTTAAAGGCTTTTAGGAAATTAAAACGACTCATAATACATATGAATGTGCATACAGGAAAATACACATGTTATGAGTGCAATaagGTTTTTCCTAGgcaagaaaatttgaattatcaTTCCTGTaaactgttttataaatttcaatgtcCTCATTgcacaaaactttttttacaaaaaaagagcTTATCAAAACATATAAAAAGAGTCCatgaaaaacaagaagaatcaCCAGGAAACAAATCCGAGAAGCGGCGTCAGATATTCTCTTGTAGTGAATGCTCCAAAACatttactttcaaaaataatttgataattcattcaaaaattCATCAACAGAGAGAAAAGTATACTTGTCCCATTTGTAATAAAGTACTTTCTTCTCAAAAAACTTACTACAAACATTATAAACTTCATGAAGGTATTCTGAACAAATGTGATATATGCGAAAAAGCTTTTAAAAGAAGAGACACTTTGAAATATCACATGGACAATGTGCATTCCGCTAAACTAGAAATCTGTGGCGTTTGCCAAAAAGCCGTGAAATCcaagaaattactaaaaatcCATATGAAATGTCACGAAAATAATTCTTTCAAATGTTCCCAGTGTCcgtcattttttaaacaacaacACAACTTGACGAGACACGTTAAAATTGCTCACGGTGTAAACAGGGGGATCCAATCCTTCCTTTCAAACATCGACAAACAATATTCATGCCCTAAATGCGATAAAAGATTAAAACGGGATAAATCGCTCAAAAAACATATAGAAACCATACACCCTGAAGCAAACATCGATTATAAAACtctgaaattaaagaaaactatcCACAAACgacaaaataatttgaaacaaactGATGACTCTGTATTGGATCTAAAACAGACTATCGAAAATATGAATTTCAGCACcgatgaaataaataatgagaTCACCATCGAGATTGACAAGTTATTAAATAATCCTGAGAATTTCGGAAGTGACAGTAACGATAGAATGGTGGAGAGTTTAATTAATACTGCTGTGAGCGAATCgaacttggaaaataaaatttcgcaAAAGGATCCAATGTTATCCATGCCTAATTTAGACATTGATGATAACATTCACtaa
Protein Sequence: MEICGICGGNHESMDCDIIQIISHIPDKTIPTRAKLTLPQGLELKKMADNSYDVVTTYVIGKGTQFGPLQAKKLCSLLPTISFPLRVFYETEENLSEYYLDTSDETECNWMMFINSATDFQEQNIVCYQNNEDIYYVTVKDICEGEALKVWYSPYYATKMQKDVLKPIINNSKENRRNMEYIDSLVKKKKNITPREMWSCKFCGKMERNISEFALHLLKHYRAKIGRFCQLCNVSFSKVQGYQKHMKIVHERDLINRLSIQSESKSNVQKTDKVIKDSLQKESYFGGPLLLNELLNDSMDNTGLVLPQIDLIGMENQNNLFENENLNLNMESILSDGVKDLDNFNFELIDNDNEQFICDICLKAFRKLKRLIIHMNVHTGKYTCYECNKVFPRQENLNYHSCKLFYKFQCPHCTKLFLQKKSLSKHIKRVHEKQEESPGNKSEKRRQIFSCSECSKTFTFKNNLIIHSKIHQQREKYTCPICNKVLSSQKTYYKHYKLHEGILNKCDICEKAFKRRDTLKYHMDNVHSAKLEICGVCQKAVKSKKLLKIHMKCHENNSFKCSQCPSFFKQQHNLTRHVKIAHGVNRGIQSFLSNIDKQYSCPKCDKRLKRDKSLKKHIETIHPEANIDYKTLKLKKTIHKRQNNLKQTDDSVLDLKQTIENMNFSTDEINNEITIEIDKLLNNPENFGSDSNDRMVESLINTAVSESNLENKISQKDPMLSMPNLDIDDNIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -