Hmer012110.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638361.1:783523-785142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0021 0.24 12.8 1.0 3 23 158 179 157 179 0.88 2 9 7.6e-05 0.0089 17.3 0.7 1 23 185 207 185 207 0.98 3 9 7.4e-05 0.0088 17.3 1.8 1 23 213 235 213 235 0.97 4 9 4e-06 0.00047 21.3 0.3 1 20 241 260 241 261 0.96 5 9 0.00032 0.038 15.3 0.4 1 23 272 294 272 294 0.98 6 9 0.00039 0.046 15.1 4.2 1 23 300 322 300 322 0.98 7 9 0.001 0.12 13.7 0.4 1 23 328 351 328 351 0.95 8 9 3.1e-05 0.0036 18.6 0.3 1 23 365 387 365 387 0.98 9 9 1.6e-07 1.8e-05 25.8 3.7 1 23 393 416 393 416 0.98
Sequence Information
- Coding Sequence
- ATGTTAGAAATATGCTTAATTTGTCTTAAAACACattcagttttattaaatattggtaaACAACAATGCGAAAATGATGATATTTTACAAAAGCTAATAGAATGTATTCCTGAATTGGATTGGAATCATACATTCCAAATATGTGACGTATGCTGTAAACAAATACATGAAGTACATTCTTTTAAAGTATTATGTATCACCTCTTACAAATCCTACTGGCTGCTAAAAAATTCGGAACCATTGATCAAAGACGAAAATCTTATAGAGTCAAAAAGTAATGAtataaatgatgaaaataaagattTCGATAATAGGGACTCCTGTAATGAAAACTTTCAAGTATCTGATAATGACTGTGATTCAGACTATAAAATAGAGTTAGAAGATGTAAAAAAGCCCGCTAAAAATAGCGATGGTAATAACGAACCTAGTGATAATGACGCTAAAGATAACCTAAAAGTATCTCCATCCTGTTTAGAATGTGGAATTacttttaagaataaatatttacaaaaacggCATTTTGACAATGTACACATTAAGGAAAAGAAATTTGTATGTGAACTGTGTAATAGAAGATTTGCTTCAATGGTCTATCTCAATGCACATAAAAGatATCATTCTGGGGATAGACCACATGTTTGTTCATTTTGTGGGAAAGGCTATATTACTGCTAGTGATCTTTATCACCATGAAAAAATCCAtgcaaataaaagaaattatagatGTGAAATATGTCCAAAAGCATTTAACACATCTTCAGATCtctataaacataaaatatgtgTTCATATGGATAGGTCTTTATGGAAATACGCCTGTGACATTTGTGAAAGAAAGTTTCCTCTAAAAATTAACCTTGATAGCCATAAAAAAACTCACACAGGTGAAAAAAACTTCCCATGTCATCTCTGTGACAGAAAATGTATTAACATGTCGGTGTTAAAGAGGCATTTACAGACTCATTCTCatctgtttttttataaatgtgacaTTTGTGAACAAGGCTACAAATACCAGAAATCCTTGGATGTTCACAAAGCAAAAGCTCATGGTATTGggacaataaaaattcaacctactgttaaaaaatttgtatgtcCACTGTGTTCAAAGGCTTATTCTGCAAATAATAAGCTACAGAAACATCTAAGAGCACATATGGGagaaaaaccttttaaatgtCCAGAGTGCCAAAAATGTTTCACAGATAAGTCCTATGTGAAGCAACATTTAAGAACAGCACACAATATGCCAAAAGAAGATTTatag
- Protein Sequence
- MLEICLICLKTHSVLLNIGKQQCENDDILQKLIECIPELDWNHTFQICDVCCKQIHEVHSFKVLCITSYKSYWLLKNSEPLIKDENLIESKSNDINDENKDFDNRDSCNENFQVSDNDCDSDYKIELEDVKKPAKNSDGNNEPSDNDAKDNLKVSPSCLECGITFKNKYLQKRHFDNVHIKEKKFVCELCNRRFASMVYLNAHKRYHSGDRPHVCSFCGKGYITASDLYHHEKIHANKRNYRCEICPKAFNTSSDLYKHKICVHMDRSLWKYACDICERKFPLKINLDSHKKTHTGEKNFPCHLCDRKCINMSVLKRHLQTHSHLFFYKCDICEQGYKYQKSLDVHKAKAHGIGTIKIQPTVKKFVCPLCSKAYSANNKLQKHLRAHMGEKPFKCPECQKCFTDKSYVKQHLRTAHNMPKEDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -