Hmer031335.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638366.1:20929852-20933476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0071 0.84 11.1 0.2 3 23 148 168 147 168 0.95 2 12 0.0015 0.17 13.3 0.4 2 23 175 196 174 196 0.91 3 12 0.00014 0.017 16.5 2.0 1 23 213 235 213 235 0.98 4 12 0.0005 0.059 14.7 0.8 2 23 241 262 241 262 0.97 5 12 3.6 4.3e+02 2.6 3.3 2 23 269 290 268 290 0.81 6 12 0.005 0.59 11.6 1.7 1 23 296 318 296 318 0.97 7 12 0.00018 0.021 16.2 3.6 1 23 324 346 324 346 0.98 8 12 1.7e-07 2e-05 25.7 3.5 1 23 380 402 380 402 0.98 9 12 0.00016 0.018 16.3 0.2 1 23 408 430 408 430 0.98 10 12 1.9e-05 0.0023 19.2 3.3 1 23 436 458 436 458 0.99 11 12 5.3e-05 0.0063 17.8 4.4 1 23 464 486 464 486 0.98 12 12 0.0013 0.15 13.4 0.4 1 23 492 514 492 514 0.98
Sequence Information
- Coding Sequence
- atggatGTAACCCAAGAAAATAAAGATGTTTATTCCGATAaagaattaaatgaattaaatattaagcaGGAACCCGAATGTATTAATTTATCTTCTACTATTAAACTCGAATTAAATGATGGAGATGCCATAGATCAATCCATTTCACATTTAAATccactaaataatataaaattagaagaatCTGACTGTAATGAGGTTATTAGTGAAGTTAAAGTATCTGAATTTTTTGTGAATACAAATgatataataaagattaaacAAGAAATAGATGAAGaggttaataaaagtattaaatctgAATTTTTAAACGAGGAATGCGATTTGAAGTCCGAGAAAGATGAGGATATTGAAGAACAAGCTTGTGGTAGTCAAGAGACTAGAGAACActataaaaaatctaaacaaattcGAAAAAGAACCAAAAGTAGGGCGAATGCATGTCCAATTTGCCGCAAAAATTTTGCAACTCGAGCATCCCGATTGACACATCTTGATTTACATTTTCGAAAGGGTCCTGTTCCTTGTAGAGTATGTGAAACtgtttttacaaataaacattCCCTGATTGAACATTCTGCCCTTCACAAAgatgaaatcgaagaaaatgCTGGATCGAGCGATGAAAGTAAAGAGCACAAATGCGATATTTGTTCTCGAGTATTGAAAACTAGGAAAACGTTACTGGCTCATATAAAAAACCATTCTGAGCAAACGCCAAAGTGTAAAGTTTGTTCCGCGGAGTTTAAGAATAAGTTGgaattaaaactacatatgtTGCTGCATAAGGGTAGAACGCCGTTGAAGTGTAATATTTGTTCTAaagaatttttatgtaaaagctTTTTAGATATACATTACAGGTTCCATTCCGGGGAAAAACCGTTCCAGTGTGAAATTTGCTCCAAACAATTTTTAGTCAGATCTCTATTAGATCATCACATGTTTGTTCACAAAGGTGTTAAACCTTTCAAATGCGATATTTGTTCTAAAGAATTCACCCACAAACCCAGTTTCGACCAACACGTTAAAAAACACAACAGACCTGACTTTTTTTCCGTTGAAATAAAAACGGAATGCGATAATGGTTTGGTAGTTTACGAAACGCAGCAAATCCCATTTGTCGAACCGAGACCGTATGAATGTGAATATTGTTCTAAAACTTACCGTAGAAAACAAGAACTCAAAAAGCACATGAGAAATCACACCGGCGAACGCCCTTATGAATGCgaaatttgtttaaaacgtTTTACTCTAAAACCGGTACTTCAGAATCATATGATCGTCCACTCCGGGGAAAAGCGGTACACTTGTGatatttgtttcaataaatttagtCAGAAAAAGAATTTAACGGATCATTATAGGAGCCACACCGGGGAAAAACCGTTTAAGTGCGATTTTTGTCCTAAGGATTTTTTCCATAGGAAAAATTTGAAGGAACATATTTTGAAACATACCGGGGAAAGGCCTTTTAAATGCGAATTGTGTTCCGCGGAATTTGCGGCGAGCAGGTATCTCAAAAGGCACGAGAAAATTCATGCGCAAGGTGAACAAATCGTAGAAAATtcgtaa
- Protein Sequence
- MDVTQENKDVYSDKELNELNIKQEPECINLSSTIKLELNDGDAIDQSISHLNPLNNIKLEESDCNEVISEVKVSEFFVNTNDIIKIKQEIDEEVNKSIKSEFLNEECDLKSEKDEDIEEQACGSQETREHYKKSKQIRKRTKSRANACPICRKNFATRASRLTHLDLHFRKGPVPCRVCETVFTNKHSLIEHSALHKDEIEENAGSSDESKEHKCDICSRVLKTRKTLLAHIKNHSEQTPKCKVCSAEFKNKLELKLHMLLHKGRTPLKCNICSKEFLCKSFLDIHYRFHSGEKPFQCEICSKQFLVRSLLDHHMFVHKGVKPFKCDICSKEFTHKPSFDQHVKKHNRPDFFSVEIKTECDNGLVVYETQQIPFVEPRPYECEYCSKTYRRKQELKKHMRNHTGERPYECEICLKRFTLKPVLQNHMIVHSGEKRYTCDICFNKFSQKKNLTDHYRSHTGEKPFKCDFCPKDFFHRKNLKEHILKHTGERPFKCELCSAEFAASRYLKRHEKIHAQGEQIVENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -