Hmer028992.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638365.1:34603487-34604872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3e-06 0.00074 20.7 2.0 1 23 170 192 170 192 0.98 2 10 0.00023 0.027 15.8 0.4 3 23 200 220 199 220 0.97 3 10 3.2e-06 0.00038 21.6 5.7 1 23 225 247 225 247 0.99 4 10 0.0032 0.38 12.2 2.8 2 23 254 276 253 276 0.93 5 10 5.1e-05 0.0061 17.8 0.1 2 23 282 303 281 303 0.97 6 10 8.3e-06 0.00097 20.3 1.5 1 23 313 335 313 335 0.99 7 10 9.1e-06 0.0011 20.2 1.9 1 23 341 363 341 363 0.98 8 10 2e-06 0.00023 22.3 0.8 1 23 369 391 369 391 0.98 9 10 9.2e-08 1.1e-05 26.5 2.3 1 23 397 419 397 419 0.98 10 10 3.8e-05 0.0045 18.3 3.8 5 23 428 446 425 446 0.95
Sequence Information
- Coding Sequence
- ATGATTTGCCGCGCGGCTTACACACTTATTAATAACGTTATTTTCGTTTTTAGTTGTTTCTACGAAGACAGATTATACATGACGTATCCGAGCGAATCTCTGTCCGGCTCCGTGCAACTTCCCAGTTTCATGGATTTGGTGAACTCGCAAAAACAACACGGAATGTCGAACATTATGGAGACGTCTGTAGTCGATCAACTGAACGACTCCGatgaattaatgaatttattatcgACCGAAGAAAATTGCACGGCCATTTTGCAGAATATATCCACGAATGAACAGTTCCAAAGATTGATGAACGAAGAATCGGAGTTCGTTCCTACTGAAGAGATCGAACAGTTGATCAATAAAATCCAACCGCCTACGCCGCATCCCGTGATAAATATTATAGATTCTCGAATAATGCAACCGGCGTCGAATATACAAACCATCGAAAATTACGGTAATTTAAACAACGAGATAAAAACCGCTCAAGCAAACACAGTAGTTAAAACATCGGAAACTCACAAATGCGATCAATGCGACAGGGTCGTATCCAGTAAACGGTTGTTGAAGAAACACATGCTAATTCACACTAAAAAACGGGACGCCCCGTGCGATATTTGCGGGAAATTATTTAGATTCAATTACGAAGTGACAGCTCATAAGAAGTCGCACGACAAACCGACTTTCCAATGCGAAATGTGCCCAAAAATGTTCGTACACAAATCCCATTTGAACTTGCACAGAAAGAAACACTTAGGGGAATATTTGACTTCGTGTAAAGATTGCCGAATGAAATTCGCATCCGCAAAAGAATTGAAAGAGCACAGAAACGATTGTCACACGAACAGCGCCGTAGTGTGCGACATTTGCGGGAAAACTTTAAATCGAATGTCGGCTTTAACGGAGCACAAACTCACCCACGATCCCAACTACGGCAAAGAAAGAAATTACGAATGCGAAGTGTGCACCAAAAGGTTCCTCAActcgaaaaatttgaaatcgcaCATGAAAGTTCACTCCAACATCAAATCGTTCGTGTGCACCATCTGCGGTAAATCGGTGAGCAGTAAAAACTGCTTATTAACGCATCTCAAGATGCACACCGGTGTTAAGGACTTCAACTGtgatatttgcaataaaaatttcGCTTCCAAAGATTATTTGATGGTGCACAAGAGAATTCACACCGGAGACAAACCGTTCACGTGTAACGTTTGCGGGAAGAAATTCACTCAAAGAAATTCGCTGACTGTTCATATGAGGTTTCACACCGGCCAAAGACCGTATAAATGCGAGTGTGGAAAACAATTCTCCACAAAGAGCCATTTAATGTCTCATTATAAGACTCACGATATTGGAGGAGTAGATATAGAATATATTACCAaccattttatttga
- Protein Sequence
- MICRAAYTLINNVIFVFSCFYEDRLYMTYPSESLSGSVQLPSFMDLVNSQKQHGMSNIMETSVVDQLNDSDELMNLLSTEENCTAILQNISTNEQFQRLMNEESEFVPTEEIEQLINKIQPPTPHPVINIIDSRIMQPASNIQTIENYGNLNNEIKTAQANTVVKTSETHKCDQCDRVVSSKRLLKKHMLIHTKKRDAPCDICGKLFRFNYEVTAHKKSHDKPTFQCEMCPKMFVHKSHLNLHRKKHLGEYLTSCKDCRMKFASAKELKEHRNDCHTNSAVVCDICGKTLNRMSALTEHKLTHDPNYGKERNYECEVCTKRFLNSKNLKSHMKVHSNIKSFVCTICGKSVSSKNCLLTHLKMHTGVKDFNCDICNKNFASKDYLMVHKRIHTGDKPFTCNVCGKKFTQRNSLTVHMRFHTGQRPYKCECGKQFSTKSHLMSHYKTHDIGGVDIEYITNHFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -