Hmer002965.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638358.1:31531896-31538172[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8 2.1e+02 3.6 0.1 2 11 171 180 170 192 0.85 2 18 0.0006 0.07 14.5 1.0 3 23 200 220 198 220 0.96 3 18 0.013 1.5 10.3 0.1 1 23 276 298 276 298 0.98 4 18 0.018 2.1 9.9 3.5 1 23 307 329 307 329 0.98 5 18 0.00013 0.015 16.6 2.4 2 23 334 355 333 355 0.97 6 18 0.15 17 7.0 6.8 1 23 360 382 360 382 0.99 7 18 6.5e-06 0.00077 20.7 2.3 1 23 387 409 387 409 0.96 8 18 0.0014 0.17 13.3 5.3 1 23 415 437 415 437 0.98 9 18 0.0078 0.92 11.0 1.8 1 23 445 468 445 468 0.95 10 18 8.3e-06 0.00097 20.3 2.2 1 23 473 496 473 496 0.98 11 18 0.002 0.24 12.8 0.4 2 23 514 535 514 535 0.96 12 18 0.00011 0.013 16.8 1.1 2 23 542 563 541 563 0.97 13 18 0.00023 0.028 15.8 2.4 2 23 570 591 569 591 0.97 14 18 0.0054 0.64 11.5 5.0 3 23 599 619 597 619 0.96 15 18 9e-05 0.011 17.1 4.5 1 23 625 647 625 647 0.95 16 18 0.00035 0.041 15.2 0.3 1 23 653 675 653 675 0.97 17 18 0.0017 0.2 13.0 0.4 1 23 683 706 683 706 0.96 18 18 2.7e-05 0.0032 18.7 3.2 1 23 711 734 711 734 0.96
Sequence Information
- Coding Sequence
- ATGGGCATCAGAGATCTCATTAAGTGTGAATACTCTAGTAAAAACGTCCTTATCAGATCCAAACTCGTCGAGGAATACCAACAAAACCTCATCCTCATCCAACCAATATTTGATAGAAACAAATTTTCAGTCAGATCATTAAACTCACAAgtaGGATCAGATGATATGTTTCCAGAAAGTGTCTGCGAAAAATGTGTTCTGAAATTGACACAAATATCTGCATTTATAGAGCTATCAAAACACACTGACGCAATAATACGAGAAGTGTTagcatttaataatattcaagaaCACAACATGGATGcaCTGTCGAAGATGCAAAAAAAACCTAAGAGTGAAGAAATTGTAGCGGTTCTTACTAGTAAGGATGACATAGATGGAGTTAAActgatttttataaatcaaaaaagTACAACCGAAGAAATTTGTGTTGTAGGTACCAATAAACGAGATATTTCCATGGAAATTGTATCTGAAGGTAAAAACGATGTGACCAAAGAAGCAACAATAGAATGCGATTTTTGCGATGAAACATTTTCAATCGGTGCATTAAAGGACTCTCATTTGGatctacatttttatgaaaatgaaatcAACTGCGCCATTTGTGGCAAACAACTTACAACTAAAGAACACTATTTTGAACACATTAAATTGCATCCATCAGAAAACTCCACACATCAAAATAATGATAGatgcaaaaaatgtttaaatacatttaaatggaAAGCCCACAGAAGATTGTTAAATTCTGATCCAACATGCGAGAATTGTCAGATACTCAAAGAAGTAACAGAATTGCCGGTATCCAACATTGAAAGTGTTTATCAATGTGGAAAATGTTTAGAAGAATTCGATTCCGAAGATGGATTATCATTACATGAAAAAATACATGAAGACGTCGTGAAAGACACTATTTTCACTTGCGATCAGTGCTTCAAAACTTTTGACTGGtactataaactaaaattacatcAAAAATCCCATATTACAAATTTATCTTGTACGAATTGCAATAAAACATTTGCcagcaaacaaaaattagagtTTCATATGAGAACTCACAGATGTACAACTTACAAATGTACTAACTGTTTCACAACGTTTCGCTGTCTCACAAATTACAACAATCACTTGATGAGACATGCTGACCAGAAATTTCAATGCAATATTTGCTTAAAGTCATTCAAAGATAAATACTACTTGAAAAAACATTCCATAATTCATTCAGGCCCACCGAAACACAAATGCGACATCTGTTTGAGGTGTTTTTTTACAAACGCTGTTCTAAAAAAACATCAGCTGACACATGTGGATGAAAGAGATAAGAAGTTTAAGTGTAGTCAATGCTTTAGACTTTACGCTAGTCAATCAAGGTTAAACAAACATGTACAAGAAACTCATATCAAAGTAAGGTTCCAATGCGATGTGTGTCCACAAAGTTTTACCAAAAGAATCAATTTATTCAATCACAGAAGAAGAAAACACCGATCACCTGATGAATCAACTAAAGAAGAAGTTTTAGATCCGCAATATGAGAAATGTACGATTTGCGAAAAACCGCTAAAAACAAAAAGCGAATATTTCATACACGTTGAACTACACAAGCCAGAAAACATTATAGAGTGCGAACAATGCTTCAAAAGATTCGACAGCAGATATAAGTTATCAGCACACCAAAGATTGCATAAATCAGAATTTCCAGACTCGTGTCCAATATGtttcaaagattttaaatacaaacacaAATTGCTGATCCACCTGAAGTCGCACTCCAAAGAAAAACCCTACGGTTGCACAAAATGCTCCAAGCGCTTCAAACACAAACACGCTCTAGTGGAGCACAAGACCGTGCATACTAATAAAACACCGTTTAAATGCTCTATTTGTTCCAAGTTATTCAGATTAAAAAGCCATTTACAAAAACATATGGTGTTCCACGAAGGTCCACCGAAATTTATGTGTGAAGTATGTTCGAAATCTTTTTATTCAATAGGTCCATTGAACAAGCACCGGTTGATACATGTGGACGAAAAAGACAAACAATTTAAGTGCGACCAGTGCTTCAAAGCTTTCGCCAGCATGCCCAAATTAACTGGACACATAAAAGAAATGCATGGCGAACCACGTTTCAATTGCGATACATGTTTAAAGACATTTAAGAGAAaacaaaatctattaaaacatattaaactGTTTCATAAGTTGAAAATTGagagtttttaa
- Protein Sequence
- MGIRDLIKCEYSSKNVLIRSKLVEEYQQNLILIQPIFDRNKFSVRSLNSQVGSDDMFPESVCEKCVLKLTQISAFIELSKHTDAIIREVLAFNNIQEHNMDALSKMQKKPKSEEIVAVLTSKDDIDGVKLIFINQKSTTEEICVVGTNKRDISMEIVSEGKNDVTKEATIECDFCDETFSIGALKDSHLDLHFYENEINCAICGKQLTTKEHYFEHIKLHPSENSTHQNNDRCKKCLNTFKWKAHRRLLNSDPTCENCQILKEVTELPVSNIESVYQCGKCLEEFDSEDGLSLHEKIHEDVVKDTIFTCDQCFKTFDWYYKLKLHQKSHITNLSCTNCNKTFASKQKLEFHMRTHRCTTYKCTNCFTTFRCLTNYNNHLMRHADQKFQCNICLKSFKDKYYLKKHSIIHSGPPKHKCDICLRCFFTNAVLKKHQLTHVDERDKKFKCSQCFRLYASQSRLNKHVQETHIKVRFQCDVCPQSFTKRINLFNHRRRKHRSPDESTKEEVLDPQYEKCTICEKPLKTKSEYFIHVELHKPENIIECEQCFKRFDSRYKLSAHQRLHKSEFPDSCPICFKDFKYKHKLLIHLKSHSKEKPYGCTKCSKRFKHKHALVEHKTVHTNKTPFKCSICSKLFRLKSHLQKHMVFHEGPPKFMCEVCSKSFYSIGPLNKHRLIHVDEKDKQFKCDQCFKAFASMPKLTGHIKEMHGEPRFNCDTCLKTFKRKQNLLKHIKLFHKLKIESF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -