Hmer016390.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638362.1:4482308-4493113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00039 0.046 15.1 3.9 1 23 641 663 641 663 0.99 2 16 0.0059 0.7 11.4 0.5 2 23 669 690 669 690 0.98 3 16 0.54 64 5.2 4.0 1 21 696 716 696 718 0.94 4 16 0.00053 0.062 14.7 3.1 1 23 724 746 724 746 0.96 5 16 0.048 5.7 8.5 2.1 1 23 753 775 753 775 0.96 6 16 0.00033 0.039 15.3 0.4 2 23 782 803 781 803 0.97 7 16 2e-05 0.0024 19.1 0.5 1 23 808 831 808 831 0.97 8 16 0.00013 0.015 16.6 1.1 2 23 835 856 834 856 0.97 9 16 3.1e-05 0.0036 18.6 3.3 1 23 862 885 862 885 0.96 10 16 6.5e-06 0.00076 20.7 0.4 2 23 893 914 892 914 0.98 11 16 6e-07 7e-05 23.9 1.9 1 23 918 940 918 940 0.98 12 16 2.6e-05 0.0031 18.8 1.0 1 23 946 968 946 968 0.98 13 16 0.25 29 6.2 6.1 1 20 974 993 974 996 0.92 14 16 0.00013 0.015 16.6 2.3 1 23 1002 1024 1002 1024 0.99 15 16 0.0091 1.1 10.8 6.2 1 23 1030 1054 1030 1054 0.91 16 16 0.0023 0.27 12.7 0.7 1 21 1062 1082 1062 1085 0.87
Sequence Information
- Coding Sequence
- atGGAGAgtaaatattatctttttcaTGGCCAAACATtggaaaatactaaaatttcagatagaaGCCATGCATTacatattggtaataaaaattgGGAAAGAATTCGCAAACATTTGGATAGAAACAAACTGGCGcaagaagagaaagaaaaagaggaagcacataaaatatatttgggaGAAGGTTCCAGAAACATGATAAAAAACTGGGCAAACTCATTAGAGaatataaggaaaagaaaagaagaagagcAAGAGAAGGCGATAGAAGAGGAAAAACAAAGACGTCAAGAAAAGTTCATCAATTTGAAAAAAGAGCAGGACGCAATGCGAAAAATGTTTGTGGATAAAGCCGAGAAAGCAATTTTCATGAATACCGCAAATGCTAAATTGTTGACAAGCGCCTACATCGAAGGCGAAATAATGCTCGAAAGGGAAAAACAAATCGAATTTAAAGCCAAACTAAAGCAACACGAAAAAGACGAAGAAGcaaaagaaatagaagaaataaaaagagtGGCACGGGAACATGAAGACGCTGTGAAAGGAGAAAGAGCCAAAGAGAGGCAAAAGAAAAAGGAATGGGGAGACGCTATGCGgcaattttTGTCCGAAAaggcaaaaaaagaaaaagaagaagcgGAAAAACTGAGACGCGAAGAGCAACGAAATTATCAAGCTGCTGAGGAAGAAATCAAATGTATGCAAAAGTTGGacgatgaaaataaattaaagaaaaaacgagaACTAAAAGCGAATATTGCCAATATCATTAATAGAGAAAAAGAAGCCCAATTATTACAGAAAACCGAAGAAAAAGAATTAGATGAATGCGTTCAAGCTTATCGAGATGCTAAAGAAAGAATCGATTGTCTCACCAAAGCAAGGGAAATTAAAatacgTGAAGAAGCTATTGAACGCAGAATAGCTGCCTCCAAAGAAGTATTCGCAGACAAAGAAGCACTATttgcaaaagaagaagaatcttTGCAAAGAGCCATAGCAGAAAAAGAAGCAgcAGAATTGGAACGGCAAAAACAGAAGGAAGAACTTCGAGAGAAACAAAAACGAGAGAAAATCGAAGACAGGCAACGCTTCTTAAAACAAGAAGCAGAGCGGTTGAAAAACgaggaagaattaaaaaaatgggaaaaattaaataaattcaaaacagtcgaagtaattaaaaaatgcgAAAAGGATCGAAAACTCAAAGAACGACAAAAAATAAACGAGTATAGGAAGGATATATTGAAACAAATAgctGAGAACAAAGCAGCTAATGAAAAGGAAATAGAAAGGGATGAATACATCAGCAGAGCCATAGCACTGAACGATGATGAAAGATTTTTCGAATTGGCAGATGAAGTTATGTCACATGCTAAAGCAAAAGGTAGAGCTACACGTCCAGTTGACTTGGCTATTCtgcaatataagaaaattaatttattggaaTACGAAAGGGGAGTAAAGGATGACCCCTCAAGATGTGAAGATTATATGGAAGGCATGAAGGGTTACACACGAAATTTTATGACAAAAGCAACGCAAGCTAAAAAGGATAAAATGAAATTCCATTCAGCAATGTTTACAAATCCAAGTTTTTCAAACGTGTTAGTAAAGCAAGAAATTCCCGATAGAGAAGATAATACTTTCATTACTAAAAACACAATTTTGTCTTCCTGTTCACAAGATATTTTGATGAAATCTGAATTAATTGAAACACATACCTACTCACCAGAATTACTTCCAATAAAATTGGAATCACCATCTActgaaaattttgataacttaATTGAACCAGATGCAGATCACCAAAGTTCTCTTGAAGAAAACTTGGAAGTGTCACTGGAAGACTTAGATGAAGAGTTTAATAAAGATCTAATAAATGAatcattttatgaaaatgagACTACTGTGTACAAGTGTCCGATGTgtgaaaaagtttttcaaaagctACACGAATATAAGGCAcataaaaagaaacattttcttGACAAAAGGACgtgtaaaatatgtaataaaattctacaaaatattgGAAAACTTGAAGAGCATATGAATAAACATTTAGGCTTAAAGCCATACAAATGTGAAGAATGTGAGAGTGcgtttatttcgatacattatCTTAAACTGCACAAAAAATGTCACAACACAGAAGCAATATATAAATGCAAGCTTTGTCCAAAGTCATTCAGAACCGTGAGCTCTCTCAGGTGTCATCAGGTTGTTCATGCTGTGAAAACTGATGATTTTAAATGTAAGGTTTGTAGATTTGACTGTAATGATGCAGCAACCTATAAATCCCATATGGCAGACCACGGCAGAAAATCAGAAATTCAATGTGGATTGTGCAATAAGACTTTCAATACAGATAAGGGATTGGAGAATCACTTAAGCAGTCATAAAGAATTGAATTTTCCATGTGAATATTGCGGTAAAATATTTCCAACGATGTACAAAATCAAAAGACACATTAAAAGAGCACATATACCAAATAAATGCGAGGAATGCGATAagGTTTTCTATGATAGAGTTTTATACACCAAACACAAAAAAGAGCATGAATCAGAAAAGCAACATGAATGTCAGTATTGCCAAAAAACGtttgaaaaacagaaaaatttgaGTGAACACATTCGATTACAACACAAGCAAGATggagaaatgaaaaaatgtgaAGTTTGTGGCAAAGAGTTCATCAATAATGCTTTATTGAAGAACCATGCCAAAACTCACGATAAAACTTTCCAATGCTCTCATTGTGATAGGGTATTTTCTTCTAGaTCGAACTTAGAGGTACATTCCATAACGCATTCCGgcgtaaaaaattacaaatgtgacatttgcaacaaaatgttGCGTTCCAAGACGAGTTTGAAGAACCATGTGGCGTCCCATTCAGATGAAAGGCAGTTCCATTGTGAAGTTTGtgagaaaaagtttaaaacgaaCAGAAGATTGTATGTTCATAAAATGTGTCATGCCACTGAAGAAAAGTACCAGTGCGAAATATGTCTACAGAAGTTCAAAGTTAAACAGTACCTGAAAATGCATATGAACAAACACTCAAAAGTTAAACCCTTTGAATGTCATGTGTGTAAGAAACGTTTCAAGCACAAAAAGTCGCGTGATAAGCACGTGAGAATAGGCAAACACAAGGAAATTACGGACGTAGAGCATGATTGCGATTTCTGCGACGAAACTTTCACGACACGAGACCTTTTGCTTGATCATTTTGCTGACATCCATCACAAAGAGAATGTCATCAATAATTTAAACGGGTGCGAAGAGGAAGATGTAACAATGGATGAAGGCGAAGTATTAGAAGAAGAGAAGAAAACGTAG
- Protein Sequence
- MESKYYLFHGQTLENTKISDRSHALHIGNKNWERIRKHLDRNKLAQEEKEKEEAHKIYLGEGSRNMIKNWANSLENIRKRKEEEQEKAIEEEKQRRQEKFINLKKEQDAMRKMFVDKAEKAIFMNTANAKLLTSAYIEGEIMLEREKQIEFKAKLKQHEKDEEAKEIEEIKRVAREHEDAVKGERAKERQKKKEWGDAMRQFLSEKAKKEKEEAEKLRREEQRNYQAAEEEIKCMQKLDDENKLKKKRELKANIANIINREKEAQLLQKTEEKELDECVQAYRDAKERIDCLTKAREIKIREEAIERRIAASKEVFADKEALFAKEEESLQRAIAEKEAAELERQKQKEELREKQKREKIEDRQRFLKQEAERLKNEEELKKWEKLNKFKTVEVIKKCEKDRKLKERQKINEYRKDILKQIAENKAANEKEIERDEYISRAIALNDDERFFELADEVMSHAKAKGRATRPVDLAILQYKKINLLEYERGVKDDPSRCEDYMEGMKGYTRNFMTKATQAKKDKMKFHSAMFTNPSFSNVLVKQEIPDREDNTFITKNTILSSCSQDILMKSELIETHTYSPELLPIKLESPSTENFDNLIEPDADHQSSLEENLEVSLEDLDEEFNKDLINESFYENETTVYKCPMCEKVFQKLHEYKAHKKKHFLDKRTCKICNKILQNIGKLEEHMNKHLGLKPYKCEECESAFISIHYLKLHKKCHNTEAIYKCKLCPKSFRTVSSLRCHQVVHAVKTDDFKCKVCRFDCNDAATYKSHMADHGRKSEIQCGLCNKTFNTDKGLENHLSSHKELNFPCEYCGKIFPTMYKIKRHIKRAHIPNKCEECDKVFYDRVLYTKHKKEHESEKQHECQYCQKTFEKQKNLSEHIRLQHKQDGEMKKCEVCGKEFINNALLKNHAKTHDKTFQCSHCDRVFSSRSNLEVHSITHSGVKNYKCDICNKMLRSKTSLKNHVASHSDERQFHCEVCEKKFKTNRRLYVHKMCHATEEKYQCEICLQKFKVKQYLKMHMNKHSKVKPFECHVCKKRFKHKKSRDKHVRIGKHKEITDVEHDCDFCDETFTTRDLLLDHFADIHHKENVINNLNGCEEEDVTMDEGEVLEEEKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -