Basic Information

Insect: Hermaeophaga mercurialis
Gene Symbol: -
Assembly: GCA_951812935.1
Location: OX638363.1:8072247-8074823[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.023 2.7 9.5 0.2 2 23 53 74 52 74 0.96

2 17 0.24 28 6.3 4.0 1 23 78 100 78 100 0.98

3 17 4e-05 0.0047 18.2 0.8 1 23 106 128 106 128 0.98

4 17 6.8e-06 0.0008 20.6 0.2 1 23 134 156 134 156 0.95

5 17 1.2e-05 0.0014 19.8 0.2 1 23 162 185 162 185 0.98

6 17 9.9e-06 0.0012 20.1 3.5 1 23 191 213 191 213 0.98

7 17 0.0056 0.66 11.4 0.3 2 23 220 241 219 241 0.96

8 17 2.2 2.6e+02 3.3 0.5 3 23 250 270 249 270 0.82

9 17 0.0055 0.65 11.5 0.4 2 23 274 295 274 295 0.97

10 17 1.4e-06 0.00016 22.8 1.0 1 23 304 326 304 326 0.99

11 17 4e-06 0.00047 21.3 1.5 1 23 333 355 333 355 0.98

12 17 6e-06 0.00071 20.8 1.0 1 20 361 380 361 383 0.94

13 17 0.00054 0.064 14.6 4.4 1 23 389 411 389 411 0.97

14 17 0.00013 0.016 16.6 2.4 3 23 419 439 417 440 0.95

15 17 1.9 2.2e+02 3.5 0.9 2 12 446 456 446 463 0.78

16 17 0.86 1e+02 4.6 3.7 2 23 477 498 477 498 0.96

17 17 0.16 19 6.9 0.2 1 23 504 526 504 526 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.023	2.7	9.5	0.2	2	23	53	74	52	74	0.96
2	17	0.24	28	6.3	4.0	1	23	78	100	78	100	0.98
3	17	4e-05	0.0047	18.2	0.8	1	23	106	128	106	128	0.98
4	17	6.8e-06	0.0008	20.6	0.2	1	23	134	156	134	156	0.95
5	17	1.2e-05	0.0014	19.8	0.2	1	23	162	185	162	185	0.98
6	17	9.9e-06	0.0012	20.1	3.5	1	23	191	213	191	213	0.98
7	17	0.0056	0.66	11.4	0.3	2	23	220	241	219	241	0.96
8	17	2.2	2.6e+02	3.3	0.5	3	23	250	270	249	270	0.82
9	17	0.0055	0.65	11.5	0.4	2	23	274	295	274	295	0.97
10	17	1.4e-06	0.00016	22.8	1.0	1	23	304	326	304	326	0.99
11	17	4e-06	0.00047	21.3	1.5	1	23	333	355	333	355	0.98
12	17	6e-06	0.00071	20.8	1.0	1	20	361	380	361	383	0.94
13	17	0.00054	0.064	14.6	4.4	1	23	389	411	389	411	0.97
14	17	0.00013	0.016	16.6	2.4	3	23	419	439	417	440	0.95
15	17	1.9	2.2e+02	3.5	0.9	2	12	446	456	446	463	0.78
16	17	0.86	1e+02	4.6	3.7	2	23	477	498	477	498	0.96
17	17	0.16	19	6.9	0.2	1	23	504	526	504	526	0.93

Sequence Information

Coding Sequence: ATGGAGTCAGATATACCCCCCATTGAAGAAATACGAATTAAAGAAGAACCAACAGATTATTGTGACTCTAACATAGACTGGAACGAAAATACACCTTGTGATAAGCTtctaaaagtcgaaattttagaGCCGAATACGCATAATAACGAAAATTTAACATGCAGAGAATGCGATGCACTCTTCGTCAACGATCATGAATTAAGAATTCACGAAATGATACATTCTAAAGACCATACATGTTTTATGTGTAAAGAGTTTGTTAAAAACAGATTCCAATTTGTGGGTCATGTTAGAAGACATATGTGTGCTAGGCCTTTCAAATGCCCTACGTGTGATAGAACTTTTCCTAGTTCAAGAGAAACTAAGTTACATGAAAGGGTCCATAGTGATGATAGACCTTATATGTGTACTGAATGTGGGAAGGCGTTTAAGcaaatttctactttaaaagaTCATGAAGTCGTCCATACAGGCGAGAAAAAGTTTAAGTGTAAGATTTGTGAGGGTGCTTTTGCAACAGCCACGAGCCTGAGACGCCACGTTCGGGTAATGCACGAGACTGTTCGTTCTTTTAGGTGTCATTTTTGTAAAGAGGGATTTACAAGTAAGCAGGCTTTAAAACAACACATGAATATCCACAGGGACACCGATCCGTTAAAGTGCCAGGTTTGTGGcgaaaaattaaacgatatTGAATCATTTACAGCTCACAGAAACAACCACTTGGATCAAAAATCGTCTGGTATTTGTGAATATTGTGggaacaaaactttttattttggatTGAAAGACCATATCGAGAAAATGCACCAACCTAGGTCGTGTGACATTTGCACCTTGGTTTTTTATGATGAAAAGTCAATTGAGAATCACAGAAAAAGTCATTTAGAAGAGGCCGTTAGGGAGGATTACACTTGTGAAgtgtgtaataaaatatttgaattcccAAGATATTTGAAAGCTCATATGAAGAGACATGAAGAAGactataagaaatttaaatgtgatCTTTGCTTGAAAACGTTTTCTTCTAAAAGAGATCTTAAAGATCACTTAAATGTGCACgctaatgttaaaaattatacctGTAAAATCTGTAATAAGGCTTTTAGAACTAAACAAAGTGTTAATAAGCACATGCCTATACACTCGGAAAAACGTCCTTTTAAATGTACTTTATGCGATAAAAGATTCAAGAAACAATCTATACTGAGAAAACATTCTTTCACGCATTCTCGAAACCGTCCATTCGGGTGCGATTTGTGTGAAAAAACTTATAAATCCAAAGAGTCCTTAAGAGTACACAAACTCACCCACCACCAAAAAGTCAAAAGGAAATGTCCTGTATGTAAATTTTCTTTCGAATACGATTCCATATTCAAAAATCACCCATGTATTAGTAGATACAGGTTTGATATTACTAAAAGAAGATGTAATTTCTGTAAAAGATTGTGTAAAACTACTGCCAGTTACGTTTACCATTTAAGAGGGCATCTTagggaaaatttatttaattgtgatATTTGTAAACTAGGTTTAAGGTATCAGTATCAAGTTAAATTGCATGAAATAGCCCATAAAAAGGAGACGACATGA
Protein Sequence: MESDIPPIEEIRIKEEPTDYCDSNIDWNENTPCDKLLKVEILEPNTHNNENLTCRECDALFVNDHELRIHEMIHSKDHTCFMCKEFVKNRFQFVGHVRRHMCARPFKCPTCDRTFPSSRETKLHERVHSDDRPYMCTECGKAFKQISTLKDHEVVHTGEKKFKCKICEGAFATATSLRRHVRVMHETVRSFRCHFCKEGFTSKQALKQHMNIHRDTDPLKCQVCGEKLNDIESFTAHRNNHLDQKSSGICEYCGNKTFYFGLKDHIEKMHQPRSCDICTLVFYDEKSIENHRKSHLEEAVREDYTCEVCNKIFEFPRYLKAHMKRHEEDYKKFKCDLCLKTFSSKRDLKDHLNVHANVKNYTCKICNKAFRTKQSVNKHMPIHSEKRPFKCTLCDKRFKKQSILRKHSFTHSRNRPFGCDLCEKTYKSKESLRVHKLTHHQKVKRKCPVCKFSFEYDSIFKNHPCISRYRFDITKRRCNFCKRLCKTTASYVYHLRGHLRENLFNCDICKLGLRYQYQVKLHEIAHKKETT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047653;
90% Identity: -
80% Identity: -