Basic Information

Insect: Hermaeophaga mercurialis
Gene Symbol: -
Assembly: GCA_951812935.1
Location: OX638365.1:34141603-34143460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6e-05 0.003 18.8 0.6 3 23 158 178 156 178 0.96

2 11 0.0003 0.035 15.4 0.3 1 23 211 233 211 233 0.98

3 11 8.6e-06 0.001 20.3 3.3 2 23 241 263 240 263 0.97

4 11 7.6e-07 8.9e-05 23.6 2.6 1 23 269 291 269 291 0.99

5 11 0.00012 0.014 16.7 3.6 1 23 297 319 297 319 0.97

6 11 2.6e-05 0.0031 18.8 0.7 1 23 325 347 325 347 0.94

7 11 0.00012 0.015 16.6 0.7 3 23 355 375 353 375 0.96

8 11 2.8e-06 0.00033 21.8 2.8 1 23 381 403 381 403 0.98

9 11 0.00016 0.019 16.3 1.3 1 23 409 431 409 431 0.99

10 11 1.5e-06 0.00017 22.7 2.9 1 23 437 459 437 459 0.99

11 11 3.1e-07 3.7e-05 24.8 0.7 1 23 465 487 465 487 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6e-05	0.003	18.8	0.6	3	23	158	178	156	178	0.96
2	11	0.0003	0.035	15.4	0.3	1	23	211	233	211	233	0.98
3	11	8.6e-06	0.001	20.3	3.3	2	23	241	263	240	263	0.97
4	11	7.6e-07	8.9e-05	23.6	2.6	1	23	269	291	269	291	0.99
5	11	0.00012	0.014	16.7	3.6	1	23	297	319	297	319	0.97
6	11	2.6e-05	0.0031	18.8	0.7	1	23	325	347	325	347	0.94
7	11	0.00012	0.015	16.6	0.7	3	23	355	375	353	375	0.96
8	11	2.8e-06	0.00033	21.8	2.8	1	23	381	403	381	403	0.98
9	11	0.00016	0.019	16.3	1.3	1	23	409	431	409	431	0.99
10	11	1.5e-06	0.00017	22.7	2.9	1	23	437	459	437	459	0.99
11	11	3.1e-07	3.7e-05	24.8	0.7	1	23	465	487	465	487	0.98

Sequence Information

Coding Sequence: atggAGGAAATTGAAATGCGAAATATTTGTAGAGCTTGTCTGACCGAACAGGGACAATTTCAGTCACTATTTATTCCACAAATTAATTCCGAAATATCACTTCATATATCCGAAATGATGACTGCCTGCGCTTCAATTCAAgTAACTTTAGGAGACGGTTTACCGGATCAAATTTGCAAATCTTGTTCAGCTGATACTCtcaacttttatttattcaaactgaaatgtgaaaaaagtgataaaatattaagagaaaGGTTGTTAAAGACAGATTTGTATGAACccgattttataaaaagtgacaGAAACGTAGAAGAGAATTTAGAGTGTGAAGAAACTGAAGACAAACCAGGGAAAGATGATGATTTTGATACTTTTTTTGATTCCTACAGTAATAATGATAGTGATGAATCTGAGCAAGATAGAGAAGATACCGAGACAGTTCCTAAAGAAAAGGTTAAAGAATTTTGGTGCGATATTTGTTCTAAAAGGTTTACAAGAAACGATTTACTCCTCAGGCACCGAATAGCTCACGCAATGAAAATGGAAGACCACAAACTTGAATTCGATAGTGGTTACCATTTAGATGATGATGAAGATGATGATTACgtggaaattaaagatttagTTTATGCTTGTAATAGGTGCGATTCGATATTTGTTCAAAAGGAAGATTTAGACACACATATAAAGTCTCATATCAAAGAAGAATATAATGTTAGCTGCCAAATTTGCCagaaaaagttttcaaaaatggcACATTTAAACAGGCATCTAAGGACGACACATTAcattgaaaaacaatttaaatgcgAAGTATGTGAAAAAGCGTTTCATAGACAAGAACAGCTTCGAAATCATATGAATAGTCATACAGGGCTCAAACCGCATATCTGTGATATTTGTTGTAAAGgcttcaatcaaatttcaaacTTGAAAGATCACATGAGAACCCACAATGGTGAGAAACCGTTTCTTTGTTCAACTTGTGGGAAAGGCTTTAATCAATTAGGCAACCTGAGGCAGCACACAGTAAGACATAGTGGAGTGAAGGCGCACCTTTGCAGTACCTGTGGAAATGGTTTTGCTAGCAAAGGGGAATTATCGGCTCATTTACGTAAACACACTGGAGCTCGACCTTTCGTGTGTTCTGTGTGCAACCACGGCTTCACTACCTCAAGTTCTCTAACCAAACATAAAAGAATCCATTCAGGAGAAAAACCGTACGAATGTGATActtgtaaaatgaaattttctagGTCTGGTATATTAGCGAGACATAAAAGGACACATACCGGAGAAAAACCTTATAAGTGTAAAttttgtttcaaAGCATTTTCGCAGTCGAATGACCTGACTTCACACCAAAGAATCCACACTGGGGAGAAACCGTTTATTTGCGATGAATGTGGGCAAGCCTTCAGACAAAGTTCGGCTTTAAAAACGCACAAAAAAACCCATATAGAAAAGAGCTCCTCTCAGGTGACGACGGGGTtagttaaaattgaaaaaactggGTCGGTAATTGAAGCCAAACCTATTTTTCTTGCAGGGACTTTTAATACCGAATATTTGTCAggtttttag
Protein Sequence: MEEIEMRNICRACLTEQGQFQSLFIPQINSEISLHISEMMTACASIQVTLGDGLPDQICKSCSADTLNFYLFKLKCEKSDKILRERLLKTDLYEPDFIKSDRNVEENLECEETEDKPGKDDDFDTFFDSYSNNDSDESEQDREDTETVPKEKVKEFWCDICSKRFTRNDLLLRHRIAHAMKMEDHKLEFDSGYHLDDDEDDDYVEIKDLVYACNRCDSIFVQKEDLDTHIKSHIKEEYNVSCQICQKKFSKMAHLNRHLRTTHYIEKQFKCEVCEKAFHRQEQLRNHMNSHTGLKPHICDICCKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGVKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCSVCNHGFTTSSSLTKHKRIHSGEKPYECDTCKMKFSRSGILARHKRTHTGEKPYKCKFCFKAFSQSNDLTSHQRIHTGEKPFICDECGQAFRQSSALKTHKKTHIEKSSSQVTTGLVKIEKTGSVIEAKPIFLAGTFNTEYLSGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00387447;
90% Identity: -
80% Identity: -