Hmer028980.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hermaeophaga mercurialis
Gene Symbol
-
Assembly
GCA_951812935.1
Location
OX638365.1:34514059-34519316[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.2e-05 0.0038 18.5 0.3 3 23 124 144 123 144 0.95
2 18 0.015 1.8 10.1 3.9 1 23 150 172 150 172 0.95
3 18 0.0041 0.49 11.8 1.8 1 23 176 198 176 198 0.98
4 18 0.13 16 7.1 0.6 1 23 204 226 204 226 0.87
5 18 0.0028 0.33 12.4 3.0 1 23 232 255 232 255 0.92
6 18 3.9e-06 0.00046 21.4 1.8 1 23 266 289 266 290 0.96
7 18 1.8e-05 0.0021 19.3 0.6 2 23 298 319 297 319 0.97
8 18 0.013 1.6 10.2 1.0 2 23 388 410 387 410 0.94
9 18 0.00043 0.05 15.0 0.3 1 23 436 458 436 458 0.99
10 18 0.23 27 6.4 0.7 1 23 462 484 462 484 0.97
11 18 0.0028 0.33 12.4 0.8 1 23 490 513 490 513 0.96
12 18 0.0003 0.035 15.5 4.3 1 23 519 541 519 541 0.97
13 18 0.001 0.12 13.8 0.4 1 23 547 570 547 570 0.96
14 18 2.2e-06 0.00025 22.2 2.0 2 23 582 604 581 604 0.97
15 18 5e-05 0.0059 17.9 2.0 3 23 618 638 616 638 0.96
16 18 0.00099 0.12 13.8 0.8 1 23 644 666 644 666 0.96
17 18 7.8e-07 9.2e-05 23.6 0.2 1 23 672 694 672 694 0.99
18 18 8.9e-05 0.01 17.1 0.5 1 22 700 721 700 721 0.97

Sequence Information

Coding Sequence
ATGCCTCATTTTTTCTTTAGGAGGCTAAACAGAACTCaggaagaaataataatttacgtCGACGAGGACGATTCAGAAACGAAGTCAGTTTGCACTTTTCTTCAAGATGACACCGATGCGGAAGACAATGAATTCTTAATAGATACTAACGAATACCAGAAAACAAACGAGGACTCCCAGTTTATTTACATCGACGGGGAATTTATGGAATTGATCCCGGTTGTAAACGATAGTACCAccgaaaaaccaaaaaaaaccAAAAGACGAGGTAAATCATACGGATCCGAGCTCATCCTGTGCAACGTTTGCGGCAAACTAATCATGGAAAAAAACATGCCCAAACATTTATCGCTACACGGCAAAAGAGACTGCACAACGTGCGGCAAAAGCTTCGATACTTACGAACAACTCGAAGACCACATGGGGCAACACTTGGACAGCCAAGACTACTGTTGCAATAAATGCAACACGACTTTCAAAACCGCTTTGGATTTCGTAATACACAACTACACGCATACCAACGTGTACTCTTGCTTGGTGTGCAGTTTCTTCACCAGCAACAAATCCTCCATGAAAGGCCACATCCGCCGCCACGAGGGCAAATACACCCACCATTGCGATATCTGCGGCAAAGGTTTTTTGGGGCGAGCGTTGCTCGACTCCCACGAAGAGATGCATCTCGATATCAAGCGCTACGCCTGCGAATTTTGCGACAAAAAGTTCTCGGTGAAACGCTATTTGCACATTCACAAGTCCCTCAATCACAAAAAGGAAATGTTCGGTATCGACCAACTGTTCCAATGCGAAATTTGCGGAAGGGAATTCACCTTCGAAAAGAGTTTAAGAAGGCACCAGAGCGTGATCCATCATATTGGGGAGGACAGAACGGTGGAGTGTAATGTTTGCCACAAGATTATCgccaataattataatttaaaaatgcacATGAGGATCCACACGGGCGAGAAGAAGTATTGCTGTGATCTgtgcgataaactaaaagaaaacaTCAAACGCGAAGACGACGACGAATGGTCGGcgccaataaaaaaatttaaaaaattgaagcaaCCAGTTaagcaaatgaaaaaaataacccAAGCGAAAACACCTAAAAAATACGTCCCGAAACTAAAACCGAACCACAAGGCACGAGCGTGGGTGTGCAAAGTGTGCTTCGACGAATTCAAAACCAGAAAAAACTTGTTCGATCACAGGAAATTAATCCACGAAGACATCGATGACGTTTTTAAAGAAGAACAGGAGTTAGTGGAGAAGTACACTTTCGATGAAGTGTTGGAGTTTTATACTTGTAACAATTGTTCTGCGGAGTTTCAAACGAAGGAGGAAGTCGAGAAGCATATTGAGACACACGAGAAGAAGTACGAGTGTCAGATATGCCAAATAACGATACACGGTGCCTTGAATTTTTCCACGCACATGCAACAGCACCGCGAAGATAAGAATTTCCCATGTCCAATGTGTCAGCATACTGCTAGCAGGAAATCAGCAATGCTTACTCACATCACCCGCATGCACTTCAGAAAGTACGATTTCCAATGCCGCACCTGCGGCAAATGCTTCAACGACGCCACAACGTTCAAAGAGCACGAAAACTACCATTTGGGGGAAAAACCGTTCTCTTGTGTTGTCTGCAGCAGGGAATTCATCTACTCCAGATATTTGATCGCTCACCAAATCCGGAACCACAGGGTGCGGGTGCTAGACAAAGAATCCAAGACCCAGTGCCACATGTGCCCGAAAATGTTCGCCAGGAGCGAAACGTTGGTGAAGCACATGCTCACCAAACACTTGACCTACCACGAAGGCCCGCACGAAAAGAAGCATTTGTGCGACGTGTGCGGTCAGGGCTTCTCGAGAACCGACAAACTCAAAATCCACTACAGGAAGCACACGGGCGAGAAACCCTACTCGTGCATCTACTGCAGCAAGAGTTTTATTAAACGGGATTATCTGATTATGCACGAGAGGATTCATAATGGGGAGAAACCGTACGTTTGCGATTATTGTGGAAAAAGTTTCAATCAGGGCGCTCCTCTTCGGATACATATGAGAAGCCACACGGGGGAAAGGCCCTACAAGTGTCCCCATTGCACCACGGGATGCGTCTCCAAAGGGGCGCTCAATGCACACATTAGAAGCTGCTTGAATTCCGTAGCttaa
Protein Sequence
MPHFFFRRLNRTQEEIIIYVDEDDSETKSVCTFLQDDTDAEDNEFLIDTNEYQKTNEDSQFIYIDGEFMELIPVVNDSTTEKPKKTKRRGKSYGSELILCNVCGKLIMEKNMPKHLSLHGKRDCTTCGKSFDTYEQLEDHMGQHLDSQDYCCNKCNTTFKTALDFVIHNYTHTNVYSCLVCSFFTSNKSSMKGHIRRHEGKYTHHCDICGKGFLGRALLDSHEEMHLDIKRYACEFCDKKFSVKRYLHIHKSLNHKKEMFGIDQLFQCEICGREFTFEKSLRRHQSVIHHIGEDRTVECNVCHKIIANNYNLKMHMRIHTGEKKYCCDLCDKLKENIKREDDDEWSAPIKKFKKLKQPVKQMKKITQAKTPKKYVPKLKPNHKARAWVCKVCFDEFKTRKNLFDHRKLIHEDIDDVFKEEQELVEKYTFDEVLEFYTCNNCSAEFQTKEEVEKHIETHEKKYECQICQITIHGALNFSTHMQQHREDKNFPCPMCQHTASRKSAMLTHITRMHFRKYDFQCRTCGKCFNDATTFKEHENYHLGEKPFSCVVCSREFIYSRYLIAHQIRNHRVRVLDKESKTQCHMCPKMFARSETLVKHMLTKHLTYHEGPHEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCIYCSKSFIKRDYLIMHERIHNGEKPYVCDYCGKSFNQGAPLRIHMRSHTGERPYKCPHCTTGCVSKGALNAHIRSCLNSVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-