Hmer028986.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638365.1:34572373-34576083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.5 8.8e+02 1.6 0.5 1 7 108 114 108 131 0.71 2 17 0.0042 0.49 11.8 0.7 1 21 137 157 137 159 0.83 3 17 1.4e-05 0.0016 19.7 3.1 1 23 165 188 165 188 0.98 4 17 0.00015 0.018 16.4 1.8 1 23 200 223 200 223 0.97 5 17 7.7e-05 0.0091 17.3 0.6 3 23 232 252 230 252 0.97 6 17 6.2e-07 7.4e-05 23.9 3.1 1 23 258 280 258 280 0.98 7 17 3.6e-06 0.00043 21.5 0.4 1 23 286 308 286 308 0.98 8 17 0.00017 0.02 16.2 0.1 2 21 315 334 315 335 0.95 9 17 0.94 1.1e+02 4.4 0.3 2 23 425 446 424 446 0.83 10 17 0.2 23 6.6 5.2 1 23 452 474 452 474 0.98 11 17 0.0023 0.27 12.7 1.6 1 23 480 502 480 502 0.94 12 17 2.2e-05 0.0026 19.0 4.0 1 23 508 531 508 531 0.98 13 17 0.0015 0.18 13.2 1.8 1 23 543 566 543 566 0.93 14 17 0.00039 0.046 15.1 0.7 3 23 577 597 575 597 0.97 15 17 3.2e-07 3.8e-05 24.8 2.7 1 23 603 625 603 625 0.97 16 17 4.2e-06 0.00049 21.3 0.5 1 23 631 653 631 653 0.99 17 17 0.00016 0.018 16.3 0.0 3 21 662 680 661 681 0.95
Sequence Information
- Coding Sequence
- ATGTTAGCCCCACAAACAAACCCACTCAGTCTTTCATCTACCATCAcaagatgtgGTGATGTTAAGCCGATACCCGGATTACCAGTGAAAGAAAAGCGGGGTAGGAAAAAGAAAAgcgaaaagaaagaaaaatcagaCGATAGTAAAAAATCCCGTCGCAAAAATTCCAACCCGAAAAAAATGGTAGTAAAACGAAACACCGTGAGCCATCCACCTCCGATAAAACTAGAAGAACCGATACACTGCGACAATTGCTCGGATTCCTACTACAACCACGTGGATTTCGCGTTTCATTCAATCAAACACAGCGAGGACGGAAAGTACTATTGCCACATTTGCAACAATTACAGAAACGCCAAAAGGTACAGCATAGAAATGCACGTGCGCGCCCACGAGGGCTCCACGAAATTCAAATGCGAAATCTGCGGCAAAGCGTTCACCATAAGCACGTACGCCATTGAGCACAAATATTTCCACACCGGGGAAAAACCGTTCCAGTGCGAAATATGCGGCAAACACTTTATGTTTTCGAGGCAATTGGCCTCCCATCGCAGAACCTCCCATTACGAAATACTAACTGGGAGCCCCCTAGTCAAATACGACTGTAGCATTTGCAACAAGCATTACGAGTCAGCATTCGGGCTCCGACGGCACAAAATGACCATCCACAACAACGTAGACTTGACGGTCATCTGCGAAATATGCGGAAAAACCATTTCGACTAAAGAAAAACTGAAATTCCACATGAGAACGCACACGGGGGATAAACCGTACCCTTGCGAAGTGTGCGGAAAATGCTTCTCGAAAAAGCATCAAATGATCGAGCACATGCGCGTGCATACGGGAGAGAAACCGTACATTTGCCCGCATTGCGGTCGGGGATTTTCACAACGAACGCCCCTGGTTTTACACGTTCGTACGCATACGGGGGAGAGGCCGAACGTTTGCAGGATTTGCGGCACCGGGTTTATTTCCAAAACGTCTTTAGAGGCTCATATGAAAAACTGTTTGATACCGTTCGCTTCtgaaataaaaatagagaaagagGAACTAGATGAAGTAGAGTATAAaccaaaaattccaaaaacgCCGAAACCACCGAAACTGAATCCGGACGGTACCGTAAAAGTATCAAAACGAGGTAGAAAGAAGGGAAGCAAAAATTTACCTAAAgacgaaaaagaaaaacaagaaaaatcgAGACGAAAGAACCAGAACCCAAAAAAAATCGTACTACACCACCCACCCCCACTAGAATTACCAGAACCAATACAGTGCGATAATTGCAGTGCATCTTACACCAACAACGTGGATTTTGCGTTTCATTCTTTAAGCCATAGCGACGATGGTAAATACACGTGTCACCTGTGCAATTACAAAAATAGCTCTAAATACCACATGGAGATGCACGTGCGAGCGCACGAAGGTACCACCAAGTACAAATGCGAGATATGCGATAAGGCTTTTACCATAAGCACGCATGCTCTCGAGCATAAAAACTTTCACACGGGCGAGAAACCCTTCCAGTGTGAAATATGCGGCAAGCATTTCATGTTTTCTTGGCATTTGGCGTCCCACAGGAGGACCTCGCATTACGAAATTCTCACAGGTAAACCGTTAGTAAAGTTCGATTGCCTAGAATGCAACAAGCATTACGAATCGGCGAGTGGTCTACGAAGACacaacataaaaaaacataaatcctCCGAAATCGACTTGTCGGTAATTTGCGAAATTTGCGGCAAAAAACTTTCGAGCAAAGAAAAGCTGAAATTCCATTTGCGCACTCACACCGGGTACAAACCGCACGCTTGTCACGTGTGTCCGAAGAGTTTTTCCAAGAAGGACCAGCTCATCGAGCATATCCGGACGCATACGGGTGAAAAACCGTACGTTTGCAAATTATGCGGGAAAGGATTCGCTCAGAGGACGCCGTTGAAAACCCACGAAAGAACCCATAATGTGGATAGACCTGGGAGCGCTTGCACGCTTTGCGGGTTAGTTTTCCGGTCTAAAATCGAGCTGGAAAGTCACATGAAGGTTTGTTTTGCGGCCCAGTTGCCGTTTGCGGCCGCTTACGGAATGAACACGATGAATTCGATGAATTACAAAATCGAGCCGCCAACTTAA
- Protein Sequence
- MLAPQTNPLSLSSTITRCGDVKPIPGLPVKEKRGRKKKSEKKEKSDDSKKSRRKNSNPKKMVVKRNTVSHPPPIKLEEPIHCDNCSDSYYNHVDFAFHSIKHSEDGKYYCHICNNYRNAKRYSIEMHVRAHEGSTKFKCEICGKAFTISTYAIEHKYFHTGEKPFQCEICGKHFMFSRQLASHRRTSHYEILTGSPLVKYDCSICNKHYESAFGLRRHKMTIHNNVDLTVICEICGKTISTKEKLKFHMRTHTGDKPYPCEVCGKCFSKKHQMIEHMRVHTGEKPYICPHCGRGFSQRTPLVLHVRTHTGERPNVCRICGTGFISKTSLEAHMKNCLIPFASEIKIEKEELDEVEYKPKIPKTPKPPKLNPDGTVKVSKRGRKKGSKNLPKDEKEKQEKSRRKNQNPKKIVLHHPPPLELPEPIQCDNCSASYTNNVDFAFHSLSHSDDGKYTCHLCNYKNSSKYHMEMHVRAHEGTTKYKCEICDKAFTISTHALEHKNFHTGEKPFQCEICGKHFMFSWHLASHRRTSHYEILTGKPLVKFDCLECNKHYESASGLRRHNIKKHKSSEIDLSVICEICGKKLSSKEKLKFHLRTHTGYKPHACHVCPKSFSKKDQLIEHIRTHTGEKPYVCKLCGKGFAQRTPLKTHERTHNVDRPGSACTLCGLVFRSKIELESHMKVCFAAQLPFAAAYGMNTMNSMNYKIEPPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911302;
- 90% Identity
- -
- 80% Identity
- -