Hmer031298.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hermaeophaga mercurialis
Gene Symbol
-
Assembly
GCA_951812935.1
Location
OX638366.1:19978993-19985178[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.8e-05 0.0021 19.3 0.2 2 23 262 284 261 284 0.95
2 13 0.15 18 6.9 3.7 1 23 317 340 317 340 0.94
3 13 4.2e-06 0.0005 21.3 0.2 1 23 346 368 346 368 0.97
4 13 3.2e-05 0.0037 18.5 0.7 2 20 374 392 373 394 0.95
5 13 9.7e-06 0.0011 20.1 1.8 1 23 405 427 405 427 0.97
6 13 0.0001 0.012 16.9 1.2 1 23 437 459 437 459 0.99
7 13 2.2e-06 0.00026 22.2 0.6 1 23 465 487 465 487 0.99
8 13 2.8e-06 0.00033 21.8 1.0 1 23 493 515 493 515 0.99
9 13 2.5e-06 0.00029 22.0 3.9 1 23 521 543 521 543 0.96
10 13 0.0001 0.012 16.9 2.0 1 23 549 572 549 572 0.96
11 13 1.6e-05 0.0019 19.4 0.8 2 23 579 600 578 600 0.96
12 13 8.1e-07 9.5e-05 23.5 0.1 1 23 606 628 606 628 0.97
13 13 4.7e-05 0.0056 18.0 3.5 2 23 635 657 634 657 0.94

Sequence Information

Coding Sequence
ATGGAGGAACCAGCTGCATCTGGTTCAAAGATAAAGAGCGAAATAATTGTGAAAtcagaaaatattgaaactcgTGAAGGAAACAGTCAAGTAGCTGTTGAAGAAAACTATGTATCTATCGAAGAAAATGATATTGAAGAAAGTGATATAGACATGGAAGGTAATGAACAACTACAGATCATAAACCTAGACAGAGCTAATTTGGAGAATAATGATATCCGTACAGTAGTTCTTCAGAACATTCAAATAGGTAGAGAAGAAGGTAATGACCATTTGGAAATAATCGGGAAGATTATTTCACAAAACAACTCTGATGGCAATCTTCAAATTAATACTTTACAAGATGATAATGTTATACATACTTACATCATAAACAATGAAGATTATGAAGAAGGTGCATCCGACACGGTAGTATACGAAGAAGTAGAAGATTGCGAAAACTCAATTGAATACGTTATTGAAGAAAGTGTTGAATATGTAGAAGAAAACCCGGAAGATCAATACGCCCAGGAGGAAATAGTAGAAGAGTATGAATATGCAACTGAGAAAACAAATGAAGACCTTACCGACGAAGAAATACTTGAGGAAGGATCTGTAGCTGAAGAAGGATCAATTCCTGATGAACCGATGGTAGAAGAACGTATAGACGACATAGCCGATTATTCTGATTATTATGATAACCCAGATTGGCAAGATGATAATGAATCAATCATGGACGAGCagactcttaaaaataatgacaaggACAAACTGAGTGTAGATGATATTAAAGAAGAACAAGTGGAGTGTGACCTTTGTAATAAAGTATTCAGAACTACTGCGGGTTTAAAAAGACATATAACTGTAAATCATGGCAGAAAAGATGATGCAGAAGGAGATGATCCACTCACTTTGCAATTGTGTCCTTGTTGCGGAGAACCTTGGGATTCTGCTCATACAattgggGATTACAAATGCGACCACTGCGACAAATTGTTTCTCCAAATTAATTTCTTGCATCGACATTTAAGTATCGAACATCCCAAAAACGATAAATTTATATGTGCCGAgtgtaaaaaaacatttgagTCTAGGGACGCTCTCATTGAGCACATGAAGATTCATCCCGTTAAAAACATCAAATGTTTAGATTGCAACAAAGAATTCACGAGGAAATACCATCTGGATCGGCATATTGGACAAACTGGGTGTATGGGACAGCCAAGGAAAGTTTTTGATTGTAGGGTATGTAAACGTTTCTTCACGAGGAAAGACAATTTAGCAGAGCATTTGAGAAACCACGCTGGCCAGGTtaagaagaagagaaaatatACTTGCGAATACTGTAAAAAAGAGTTTCAAGGTTATACTTTACTGAATATCCATGTAAGGACTCACACAGgtGAAAAGCCTTATCAATGTGATTTGTGTCCTAAACGATTTCCTTCCAGTGGGGCAATGAAGAAACACAGGAGAATGCATACAGGGGAAAAACCTTATCGTTGCGAACAGTGTGACAGAACTTTCGCCGCAAAAGAAACTTTGAATCGCCATTACCGTATCCACACCGGCGACAAACCTCACCAATGCAAATTCTGCGGCAAATCGTTTATTCAACCATCGCAGCTACGTGCACATATTTTCCATCATACTGGCGAAAATGCGTACACGTGTCAGTACTGCGGACGGGCATTCAACCGAAAGCTTCGTCTCAGCAACCACATCAAATTTATGCATGAAGGAGCCGAACCGTTGCCATGTTCAAAGTGCAACAAGACATTCTTCAGGAAGGAGGATGTTGCTAGGCATATGTTGTCTCATAGTGGACAGAAACctttcGCTTGTGATGTGTGTGGAAAAGGTTTCGCAGTAAAGTCCTCGTTGAAGATCCACATGAACATACATCGTAAGGAACCACCTTGTAGCTGCGAAACCTGTGGAAGGGCATTTATACGTCGCGATTGTCTCATGAGGCATATTAGAGCTCGACATCGTGATGTGTTGGAAGATATTTTGGCTAATGCCGAGAAGAAACGGCTTCAACAACAGTTGCTGTCGGCGGCCACCGAATCAGCAAACGAAAATTTGAACGAGAATATCATTTGGAATGAGCTCACTCTAACAGAGTCTATAAAAGAACTGTTGACTCTTTTAGTTGATGAAGAATGTTTGTTGGAATTTGGTTATCCCGATGCGCCTGTAGATAAGGTTCTTGATAGTGTAATCAAGAGGTGTGGACACAAACCAGCTTCTGAAGATGATTTTGACTACATTGGACGAATGAGAGAAAACGCTAAGCTTTTGTTCACTGTAGTAATCGATGATGAAGCcgtaaaagaattattaaacaaCCAGACTGTTGATGAAGTAATTCTTCATGTTTTACGATTGGCGAAAAAGCAGAAAAATAGTAGTTGA
Protein Sequence
MEEPAASGSKIKSEIIVKSENIETREGNSQVAVEENYVSIEENDIEESDIDMEGNEQLQIINLDRANLENNDIRTVVLQNIQIGREEGNDHLEIIGKIISQNNSDGNLQINTLQDDNVIHTYIINNEDYEEGASDTVVYEEVEDCENSIEYVIEESVEYVEENPEDQYAQEEIVEEYEYATEKTNEDLTDEEILEEGSVAEEGSIPDEPMVEERIDDIADYSDYYDNPDWQDDNESIMDEQTLKNNDKDKLSVDDIKEEQVECDLCNKVFRTTAGLKRHITVNHGRKDDAEGDDPLTLQLCPCCGEPWDSAHTIGDYKCDHCDKLFLQINFLHRHLSIEHPKNDKFICAECKKTFESRDALIEHMKIHPVKNIKCLDCNKEFTRKYHLDRHIGQTGCMGQPRKVFDCRVCKRFFTRKDNLAEHLRNHAGQVKKKRKYTCEYCKKEFQGYTLLNIHVRTHTGEKPYQCDLCPKRFPSSGAMKKHRRMHTGEKPYRCEQCDRTFAAKETLNRHYRIHTGDKPHQCKFCGKSFIQPSQLRAHIFHHTGENAYTCQYCGRAFNRKLRLSNHIKFMHEGAEPLPCSKCNKTFFRKEDVARHMLSHSGQKPFACDVCGKGFAVKSSLKIHMNIHRKEPPCSCETCGRAFIRRDCLMRHIRARHRDVLEDILANAEKKRLQQQLLSAATESANENLNENIIWNELTLTESIKELLTLLVDEECLLEFGYPDAPVDKVLDSVIKRCGHKPASEDDFDYIGRMRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQKNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-