Basic Information

Insect: Hermaeophaga mercurialis
Gene Symbol: -
Assembly: GCA_951812935.1
Location: OX638366.1:7038162-7046768[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.7e-06 0.00056 21.1 0.4 1 23 184 206 184 206 0.98

2 12 1.7e-05 0.002 19.4 0.8 1 23 212 234 212 234 0.98

3 12 1.7e-05 0.002 19.3 3.1 1 23 240 262 240 262 0.98

4 12 0.00014 0.017 16.5 1.4 3 23 276 296 274 296 0.95

5 12 0.00015 0.018 16.3 0.2 2 23 303 324 302 324 0.96

6 12 2.5e-06 0.00029 22.0 0.9 1 23 330 352 330 352 0.98

7 12 2.8e-07 3.3e-05 25.0 0.5 1 23 358 380 358 380 0.99

8 12 5.6e-06 0.00066 20.9 0.4 1 23 386 408 386 408 0.98

9 12 1.7e-07 2e-05 25.7 1.3 1 23 414 436 414 436 0.99

10 12 9.9e-07 0.00012 23.3 0.8 1 23 442 464 442 464 0.98

11 12 4.7e-05 0.0055 18.0 4.1 2 23 471 492 470 492 0.93

12 12 6.4e-08 7.6e-06 27.0 1.8 1 23 498 520 498 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.7e-06	0.00056	21.1	0.4	1	23	184	206	184	206	0.98
2	12	1.7e-05	0.002	19.4	0.8	1	23	212	234	212	234	0.98
3	12	1.7e-05	0.002	19.3	3.1	1	23	240	262	240	262	0.98
4	12	0.00014	0.017	16.5	1.4	3	23	276	296	274	296	0.95
5	12	0.00015	0.018	16.3	0.2	2	23	303	324	302	324	0.96
6	12	2.5e-06	0.00029	22.0	0.9	1	23	330	352	330	352	0.98
7	12	2.8e-07	3.3e-05	25.0	0.5	1	23	358	380	358	380	0.99
8	12	5.6e-06	0.00066	20.9	0.4	1	23	386	408	386	408	0.98
9	12	1.7e-07	2e-05	25.7	1.3	1	23	414	436	414	436	0.99
10	12	9.9e-07	0.00012	23.3	0.8	1	23	442	464	442	464	0.98
11	12	4.7e-05	0.0055	18.0	4.1	2	23	471	492	470	492	0.93
12	12	6.4e-08	7.6e-06	27.0	1.8	1	23	498	520	498	520	0.98

Sequence Information

Coding Sequence: ATGGACATGAGGATGTATTTAACCGCTCCCCtacaaattgataaaatatgtaGGGCTTGTTTGACGGAAAAAGGCGACATGAGACCACTATTTGGGGCATGCTTGGACGAAATGCTCAATTCATTCGCTGCCATACAGgttGCCGAAAACGACGGTTATCCTAATCTCATGTGTGTACAATGCGTTCTGCAATGCAGCAGGGCGTACACGTTCAAGCAACAATGCGAAAAATCTGATAACATATTAAGACAGTATCTTTCACCAGAATTTCAGCAACAATTAGCGGAAACAATCGCCGAAAAGCAAAGGGAACAAGCGAAACAAGAATTGCAAGAGCAACTCCAATTTTCTGATATAGGAACCGTTATTATCGATCAAGATATTCCCGAATTCGTGACTTACTCTGAAGAAGATCAATTAgatGTAAAACAAAGTATTTATACTATTGAAGCGACGGCTGTAGAACAAACAAATCCTTATAAAGATGACCTGGAGGATGGGATAGTTTTGCAATTGGAAACGAAACAGGATCcattaaacaaattgaaatattcTTGTACAAAGTGCGATATGTCTTTTGCTCTAAAAGTCGACCTTAAGGTGCACATGATGTCGCACCCCAAAGACTTAGACTACGAGTGCCACGTGTGCGACAAGGCTTTCAGCGAACCGCGGATTTTGAAGCGACACCTCAAGATCCATTTGGAGCAGAAACCTCATCAGTGCGACCAGTGCGACATGTCGTTCGCAGAAAGCTCGAACTTGAGCAAACACAAGAAAAAGCACACCGGCGAGCTGAGGAACATCAAAGGAAAACCCCATTTGTGTTCGGTGTGCGGCAGGGCGTTTAAGTGGGCCTCGAGCTTATCCAAGCACATGAAATACCATACCGGCCATAAGTTATTGTCTTGCGAATATTGCGGGAAGCAATACGTCGAGGCGAGGAGCTTGAAGATCCATTTGAGTTCACATACAGGTGAAAGGCCTTACGTTTGTGAAGTGTGCGAAAAAGGTTTTACGCAAATTTGCAACTTGGAGAAACATCTGAGAGTTCACACAGGTGAAAAACCTTACCAGTGCCCCATTTGCAATAAAAGATTCACTCAGTCGGGTTACGTGGGGATTCACATGCGCACGCACACCGGTGTGCGTCCGTACGTGTGCGGCACTTGCGGAAAAGCGTTTGCTGCGTCCAGCACTCTCAACATTCACCAACACACGCACACTGGAGAGAAACCTTACACGTGTCAGGTGTGCAACAAATCTTTTAGTCGGCAGGAGACGCTCATCATACATACAAGGTCGCACACTGGTGAAAAACCGCACGTGTGCTCTGTGTGTAATAAGGCATTTACCAGCTCGGGATTGTTGTCGGGGCATATGAGAACGCACACGGGGGAAAAACCACATGCGTGCGAGTGCTGTGACAAAAAATTCGCCAGTTCGAGTAGTTTGAAGGTCCATATGAGATCGCACACCGGCGACAAACCGTTCGTTTGCAAAGTTTGCAACAAAAGTTTCTCCCAGTCGAGCTCTTTGCAACAACATTTGACCACACATGTGACCAAATCCGAAATTAAAGTTGAGACTGTTCATGTCACCTTGCCCGAACTCATGTaa
Protein Sequence: MDMRMYLTAPLQIDKICRACLTEKGDMRPLFGACLDEMLNSFAAIQVAENDGYPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSPEFQQQLAETIAEKQREQAKQELQEQLQFSDIGTVIIDQDIPEFVTYSEEDQLDVKQSIYTIEATAVEQTNPYKDDLEDGIVLQLETKQDPLNKLKYSCTKCDMSFALKVDLKVHMMSHPKDLDYECHVCDKAFSEPRILKRHLKIHLEQKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCGKQYVEARSLKIHLSSHTGERPYVCEVCEKGFTQICNLEKHLRVHTGEKPYQCPICNKRFTQSGYVGIHMRTHTGVRPYVCGTCGKAFAASSTLNIHQHTHTGEKPYTCQVCNKSFSRQETLIIHTRSHTGEKPHVCSVCNKAFTSSGLLSGHMRTHTGEKPHACECCDKKFASSSSLKVHMRSHTGDKPFVCKVCNKSFSQSSSLQQHLTTHVTKSEIKVETVHVTLPELM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912434;
90% Identity: -
80% Identity: -