Hmer028999.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638365.1:34630846-34636419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.8e-06 0.00045 21.4 1.6 2 23 261 282 260 282 0.96 2 19 0.44 52 5.5 0.5 2 23 288 310 287 310 0.91 3 19 0.0061 0.72 11.3 3.0 1 23 316 339 316 339 0.97 4 19 0.00073 0.087 14.2 0.4 1 23 345 368 345 368 0.97 5 19 4.8e-05 0.0056 18.0 0.2 1 23 373 395 373 395 0.98 6 19 4.7e-06 0.00055 21.1 2.6 1 23 404 426 404 426 0.99 7 19 9.6e-08 1.1e-05 26.4 1.5 1 23 433 455 433 455 0.99 8 19 0.0012 0.14 13.6 0.1 1 17 461 477 461 478 0.93 9 19 7.8e-05 0.0092 17.3 0.2 1 22 489 510 489 510 0.96 10 19 0.00093 0.11 13.9 0.2 2 23 515 536 514 536 0.95 11 19 0.61 72 5.0 0.4 2 12 543 553 542 555 0.88 12 19 4.6e-05 0.0054 18.0 1.0 2 23 574 596 574 596 0.95 13 19 0.0018 0.21 13.0 2.3 1 23 606 629 606 629 0.97 14 19 4.2e-06 0.0005 21.3 6.2 1 23 634 656 634 656 0.98 15 19 1.2e-05 0.0015 19.8 1.5 1 23 665 687 665 687 0.97 16 19 0.031 3.7 9.1 0.4 3 23 695 714 694 714 0.95 17 19 1.8e-05 0.0022 19.3 1.8 1 23 720 742 720 742 0.98 18 19 5.4e-06 0.00063 20.9 1.9 1 23 748 770 748 770 0.98 19 19 0.00019 0.023 16.0 0.6 1 20 776 795 776 797 0.94
Sequence Information
- Coding Sequence
- ATGAGTGACAGTGAGGTTGATGATATAAAACCTGACATCGGTGAACTTGGTAAAAGGGCGACGTGCAATATACTACCGATAAAATCTCGCGATAGATACGAGATtacgtataaaaaatttatggacTGGAGGCTCAGCAACAATATAGAATCGTTTACGGAAGATGTGTTATTGAGATATTTCGAATTGTTATCAGAAAAAATGAAACCGTCTTCGTTATGGGCCTTTTATTCCATGCTAAAAATGACGCTGAATATAAATAATCAAGTTAATATCTCGCCGTATGCAAAACTAATAGCGCTACTCAAAAGAAAGTCGGATGGTTTTACCAGCCTCAAATCGAAAATTTTAACTGccgaagaaataaataatttcctacAGAACGCACCGGACGGCAAATATTTACTGATGAAgGTAATTCTTATTATTGGAATCAGCGGTGCTTGCAGAAAAACCGAATTGAGAAATATTAAATCCGAGCATATAGAAGATACAGGAAAATCGTTGATAATCACTATTTCCGATGCGAAAACTAACGTACAACGTTCTTTTATCATTTCTGAAACTTACTACCCCAAATGTAAGAAATACATGGATTTGCGGCCTACGGGGGAAAACACTAAAAATTTACCGTTTTTCCTAAACTACCAAAAAGGAAAATGTATCAAACAGCCCGTCGGAATCAACACAATAGGAAACGTACCGAAAAAAATTGCCGAATATTTAGGATTAGCTGATGTAAAACGTTACAATGGGCATTGTTTCAAAAGATCGTCatgtcaATGCGCTAAATGCGGCAAGGTTTTTCCAAAACCGACGAGCCTAAGGTACCACATGAAAGTTCACAGGGAGAAAAAGGTCCCTTGCGATATATGCTCCAGgaaatttttgtacaaaaacaTGATGATAAAACACAAAAAGGACGTTCACTTCGCCGACTACGACTACAAATGCAATAGTTGCACTTCGGCTTTCAAAACGGCTTTATGCTTAAAACAGCACATGCAAAATGTACACTTGAAAAATTACAGCTTCACTTGCGAAAAATGTGGAAAaggtttttttttacaaaatttactagACGTTCATTATAAAGTTGTACACGAGGATGTAAGATTTAAATGCGATTATTGCGAAAAGCCTTATAAGACTTTGCAAGGATTAAGAGCTCACGTTATTATCCACGATCTGAATCACCAAAGGAAAGAATATAAATGTAAAGAATGTTTTGCTGTTTTCACATCCAGGTCCACTTACACCGTTCACATGAGGAAACACAGATTAGGCGAAGAAAAATACACTTGCGATATCTGCGGGAAGAGCGTTACGAAGAAAACTAGTCTAAAATCGCATATGCGTACGCATACGGGGGAAAAACCGTACGAGTGTAAAATATGCGGCAGAGCTTTCAATACGAATCAATTATTGAGAGTCTATTTAAGAATTCACTCGAACGAAAAACCGTTTACTTGTTCTATATGTAAGAAGGGCTTTAGGCAAGGACCTGCGTTGAAAATACACATGAGatccGCAAACGACTGGAATTGTTGGGTATGCGGAAGAACGTTTGAACTAATGAAAAACTTCGAAAACCACATCAAATGGCACAACTCCGACCAACCAGACAAATGCGGGAAATGCGGAAAAGAGTTCATCGACGACGACATATCCTCCCACTTAGAAACTTGCACTTTCGACAAAAACGTTAAAGCCAAACCTCAGTGTAATTTGTGTAAGAAGATGTTCCGCGATAAAGTGTCTTTAAGGGTGCACCTAAGCAACGTCCACCTGCAAACCCTGAAGAAACGACGTACTTTTTCCTGCGGTAATtgcgataaaatattttactgcaaAGCCAATTTACAAGAACACACAAGAGTGACGCACGAAGGGTTTTTGTACTCGTGCACGCATTGCCCGAAATCGTTTAAATTCAAATACAACTTCGAGAATCACATTAAAAAGCACGACGTTAATTACCGAACGAGCAACTACGAGTGCGAAAAGTGCGGCAAAGCGTACACCCATCTGGGTTCGTACAAACGCCATATCAGCGACCACGACGGGAAATACGACCGGATGTGCGAAATATGCGGGAAAAAAATCAAATCGTTCAGGCTGGAAGAACACATGCGGGTTCATACGGGGAGACGGCCCCATAAATGTAGAGTTTGCGAGAAACGTTTCGCTACAAAAAACAATCTTATAGAACACGAACGGGTGCACACCAAAGAAAAACCGTTCGTTTGTAATGTGTGCAACAAGGGATTTTCCCAAAGTACTTATTTGAAGATACATAAGAGGTACCATACGGGGGAGAAGCCCTACAGATGTGACATTTGCGGGAAATCGTTTGTGTCCGGAGCGCTACTCAAAATGCATAAATGTCAGGGGTTTTGTGAAGACAATTCTAATTCAactatttaa
- Protein Sequence
- MSDSEVDDIKPDIGELGKRATCNILPIKSRDRYEITYKKFMDWRLSNNIESFTEDVLLRYFELLSEKMKPSSLWAFYSMLKMTLNINNQVNISPYAKLIALLKRKSDGFTSLKSKILTAEEINNFLQNAPDGKYLLMKVILIIGISGACRKTELRNIKSEHIEDTGKSLIITISDAKTNVQRSFIISETYYPKCKKYMDLRPTGENTKNLPFFLNYQKGKCIKQPVGINTIGNVPKKIAEYLGLADVKRYNGHCFKRSSCQCAKCGKVFPKPTSLRYHMKVHREKKVPCDICSRKFLYKNMMIKHKKDVHFADYDYKCNSCTSAFKTALCLKQHMQNVHLKNYSFTCEKCGKGFFLQNLLDVHYKVVHEDVRFKCDYCEKPYKTLQGLRAHVIIHDLNHQRKEYKCKECFAVFTSRSTYTVHMRKHRLGEEKYTCDICGKSVTKKTSLKSHMRTHTGEKPYECKICGRAFNTNQLLRVYLRIHSNEKPFTCSICKKGFRQGPALKIHMRSANDWNCWVCGRTFELMKNFENHIKWHNSDQPDKCGKCGKEFIDDDISSHLETCTFDKNVKAKPQCNLCKKMFRDKVSLRVHLSNVHLQTLKKRRTFSCGNCDKIFYCKANLQEHTRVTHEGFLYSCTHCPKSFKFKYNFENHIKKHDVNYRTSNYECEKCGKAYTHLGSYKRHISDHDGKYDRMCEICGKKIKSFRLEEHMRVHTGRRPHKCRVCEKRFATKNNLIEHERVHTKEKPFVCNVCNKGFSQSTYLKIHKRYHTGEKPYRCDICGKSFVSGALLKMHKCQGFCEDNSNSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -