Basic Information

Gene Symbol
Trerf1
Assembly
GCA_951812935.1
Location
OX638362.1:25104509-25145846[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.3e-09 1.2e-05 26.2 0.1 2 46 1157 1201 1156 1201 0.96

Sequence Information

Coding Sequence
ATGAAGGGACAAAAGACCAACAATAATCATGAAATATGTCGTCTCATTGTGGCTTTATCGATGGACAGACGAACAAATGGTCAGACGTCTCCTCGTAATGAACAGATGAATTTTGCGTCGTGCAACTTCGCTTTCATTGCTTTGTCATTTATTGTATtatCAACAACAACTGCAGATGATAAGAAATCAATAAATACGACGGAGTGCTCGAAGGGATCCAGCAAACGCTCCCGACCTAAACCTACGTCGCCAAATAGACAAGGACCACAACAATGTCAGgttTGTGCCAAAGTATTCGGGAACGCCTCTGCCTTGGCAAAACACAAACTGACTCATAGCGATGAGAGAAAATATGTATGTAGCATGTGTGGAAAAGCATTCAAACGCCAAGACCACCTAAATGGACACATGCTAACCCACCGCAACAAAAAACCATACGAATGTAAAGCAGAAGGGTGCGGTAAGAGTTACTGCGACGCAAGATCATTAAGGAGACATACCGAAAATCATCACAGTTCTCCAGCTACAACTGTTAATGCAACGACAACAACGCTTTCACCGGCTCAAGGAGCTGCATCTGGTGACGCAGCTTCTCCTCACGGAGGAAAATTAGAGAGCTGTATTCAGTACGCACCACCTCCGACGTCGACGACTAGTTCTACGACGACATCAGTAACTGATACTGGGACCAATGTTACAAGTACCAGTAGCAGTAACAGCGGGAAGAGTCAACTCCAGCAGCTATTGGCTACAGAACCAGCAAAGAACACCAACAGTGGCAACAATGACGGGCTGACTAAACAACAGCTGGATCTGATACATCAAATAATGGAACAGACCCAAAGACAATCGCAAGCCGTGGCGGCGGCAGCGGCGGCGGCAGCGGCTACTGCTACAAAATCCGTAACTTCCAAGTCATCCGTAAAATCACCTGGAAGTGGCAAATCATCCTCCAAATCTCACCAAAGCAAATCTTCAACGTGGTCGTCCACTtcgGGTCAACAACAGACGAACAATAAAAATTCCTCAAGTTCAACAGCAAGCGGAGCAAATATGCACTCCAAAGTTACCACTACAACTACACCTACATCTCCTGTTAACTCAACAACTGGAAAAACAGAACCAAAACCAGTGGAATGCAACCTGTGTCACcgaaaattcaaaaacatacCTGCCCTAAACGGTCATATGAGACTCCATGGAGGATATTTCAAAAAGGATAAtgacaacaaaaaaaatgagaaaaaagaaGTTCTGGTGCCGCCTTTACAGACAGCAAGCTTCAGTGTTAGAGcattaatagaagaaaaaatcatCAACAAACGCATAACCAATACTCCTCAACAAACTGAAGAACAAAAGTCCAATGCGCCGCCTCTATATCCCTTAAACGTGCATTCCTCTCGAACAACTCCTGACCTTGAGTCGAAGATATCATCGTTCGTCGTGCCTGCTCCTCCCATATCGACCACTGACAAAACCCGAAGACATTCCGATGCGGAGACTTTTCGCAATAATACCACACAGCAGGAGGCGCAAGCTCTCGCAGATCTTATTTTGAAACGTGAAAAGGCCACTGTGAAAAGAACAACCTCGGATCCTGGCCAAACTTCGGCTATTATTCAATTCCAATCAAATGAATCTTTTCCTTTAGCTAACATCACGTACCAATCAGAAGAAGCCGAATTTATATCCTCAAGTTTACAAGAAGGAGTGTTTACTCAAGTACCAGACAGCATGCTTCTACAAAGCGTCGATCCTACTCAGTTAGCTTCGATACAGTTTCAAACAGAAACTCTCCTTCACGACCAGGTTGAGCAACGTTCccatgaaattaaaatagaagacATCGATCTTGAAGAACCTGCGATACAACAGTCACCGTCGTATCCAGCAAACCACCCAGTGAATCATGAGCTTCAAGCGGTTTTGGATTCGCCGTTACCAGAGAGTTTGGCGGAATTCAGTACTTTCCATTCGACTAATAGTATCGATATGCCCTCTCCAAGCTACCGGACCCAGTCACCTGCTCAATATGCTAGGTCTCCACACACAATTACAGCTCAATCACCTTTGCAGAGTCCTCTTATAAGGCACGATTCCCCAGGATTTGCTTACCCTACACCTCCTGCCAGTCACGAAGGGCAGAGTCCAGGGTTTGGACAGAATACCATCCTTCCAATGGTGTCACCGAATGCACAAGAATTTGGGCAGATGGTTGAAAGAGgtgTTTATGAAGAACCCCCACAAGCATCTTCTCCGCTATCTGCTGCATTCTATACATCAACGATGTCAAGTTCCGCGGCAGTGGAAGAAGCTTTAGAGGAAGTATTGCCAGACGAGCCAATTTATCCTTTAACTAACTCTTCCTCTCCTTCATCTCCTCTGGGTCTAACCCCGGTGCCATCTCCAATATCAAATGTTGTAACAACTTCAGATCCGTCACAATCTTCGACAACATTTACCCCTTCAACTACTTCCACATTTACCGTACCTTCTAGTTGGTGCAATGGAGTTATGCTTCCAAATTCGGATGACCCTCTGTTGTCCAGCAGCCCCAAAGACTTTATTGCCAGAAAGAAAATCGAAATCAACGGAGTTCCTCTCAGGCTAATAAGTAATAACGGCCTAATAGAATTAAATAGCGCAAATTTTGCTGGAATCTTAGTTGACGCCAATGGAGAAATCAAGCTTATTCAGACAGGAGGCAACAATTTCCAcaccaaaaactttttattaacgAACGGTCCTTTAATCGCTCAAGATAATAGTgatgataaaagtaaaaaagtgataaaaacTGTACAATGTACTATTCCAACGAAACAAATTATCAATAGGCCTAAAATAGTTAACGATTATAAGAAAGAAGACAACAACGATGTTTTTTTAAGTCCTACTTCGATACCTGCTAGTCCAGTAAGAATATCCAGAAAAAGGCCTAGAACAGAACCCCTTCAGTTACCTCTATTACATCAATCAAAACTTAGGGCAACAAGAAGTAAACCCCCCGGAACGGCTAGGTATACTCCTCAACCCATACTCAATCAGCAGAGGCCCGGCACTGGactttatggaaatttaaaaatagctaaaaATGAGGATGGAATATGGAACAACGAACCGATCCCAGAGAATGATTCAACGCCTCATGTTAACATAGGTTACCAATACCAGTGCATTGTATCAAATTTCTCATCTAATCCCGACAGAAGTTGCCTAGATCCAACGCACGAAGATTTATTATGGGACCCGGGCATAAATAATTGCACCAACAATGAAGTGGATATGTACCTGGATTTTGCTTGCTGCGCTGCAGTACCAGGTGGTGGAAGAAATAAAGAATACGCTATGCATCTTCTTTATATGTGTGGAGGAAATATACATgatGCAATGTTGCGACTGATGCAGCCTTCACCAAACCTTCCGCCAGATCATCCCCTTCTAGCGTATCAGTATTGTGAAAGTGACAAATGGTCAACGACAGAAACTGATATTTTCCATAAGTCGCTGCTCAAATATGATAAAGATTTCCGCAGTATTGCTCAAGAGattagaacaaaaacaataaagcaatgtgtgcaattttattatgtatGGAAAAAGGTTTGCTCTGATGAATAtcgaaaattgaaatatctaagaGAGAAAAGGAATAGCTGTTATAAAAATGGAGAAATGGAAATGGATGAGAAATTATTTGCTGATGCTAAATTGTTAGGGattgctGACAGTGGGTCACCGTTGCCAATACCGGATACAAGAAGTTTTGTATGCGAGTTTCCTGATTGTTCAGcaAGTTTTAACTCGCGGGCAGCTCTGAATGGTCACATTCGAATACACGGGGGTACGGCAAGAAATTCCCCGACTCCCTCCTCTACAAGTACAGTGGAAAGGCGAACAGTACCTGTCACTTCCTCCAATATCTGTCATCCAGATTCGACTGAAGAGTACCCCTGTAAGATTTGCGGGAAAGTGTTCACGAAAATCAAAAGTCGTAGTGCCCACATGAAATCACATCGACCACCTGATGCGGAACCcgttaaaagaaaagaaaaagaaacccCCTCATCTACAAGCTATGAACTCTCCGTGCCAAGCCCGTTTAGTACTTAg
Protein Sequence
MKGQKTNNNHEICRLIVALSMDRRTNGQTSPRNEQMNFASCNFAFIALSFIVLSTTTADDKKSINTTECSKGSSKRSRPKPTSPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSPATTVNATTTTLSPAQGAASGDAASPHGGKLESCIQYAPPPTSTTSSTTTSVTDTGTNVTSTSSSNSGKSQLQQLLATEPAKNTNSGNNDGLTKQQLDLIHQIMEQTQRQSQAVAAAAAAAAATATKSVTSKSSVKSPGSGKSSSKSHQSKSSTWSSTSGQQQTNNKNSSSSTASGANMHSKVTTTTTPTSPVNSTTGKTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDNDNKKNEKKEVLVPPLQTASFSVRALIEEKIINKRITNTPQQTEEQKSNAPPLYPLNVHSSRTTPDLESKISSFVVPAPPISTTDKTRRHSDAETFRNNTTQQEAQALADLILKREKATVKRTTSDPGQTSAIIQFQSNESFPLANITYQSEEAEFISSSLQEGVFTQVPDSMLLQSVDPTQLASIQFQTETLLHDQVEQRSHEIKIEDIDLEEPAIQQSPSYPANHPVNHELQAVLDSPLPESLAEFSTFHSTNSIDMPSPSYRTQSPAQYARSPHTITAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPGFGQNTILPMVSPNAQEFGQMVERGVYEEPPQASSPLSAAFYTSTMSSSAAVEEALEEVLPDEPIYPLTNSSSPSSPLGLTPVPSPISNVVTTSDPSQSSTTFTPSTTSTFTVPSSWCNGVMLPNSDDPLLSSSPKDFIARKKIEINGVPLRLISNNGLIELNSANFAGILVDANGEIKLIQTGGNNFHTKNFLLTNGPLIAQDNSDDKSKKVIKTVQCTIPTKQIINRPKIVNDYKKEDNNDVFLSPTSIPASPVRISRKRPRTEPLQLPLLHQSKLRATRSKPPGTARYTPQPILNQQRPGTGLYGNLKIAKNEDGIWNNEPIPENDSTPHVNIGYQYQCIVSNFSSNPDRSCLDPTHEDLLWDPGINNCTNNEVDMYLDFACCAAVPGGGRNKEYAMHLLYMCGGNIHDAMLRLMQPSPNLPPDHPLLAYQYCESDKWSTTETDIFHKSLLKYDKDFRSIAQEIRTKTIKQCVQFYYVWKKVCSDEYRKLKYLREKRNSCYKNGEMEMDEKLFADAKLLGIADSGSPLPIPDTRSFVCEFPDCSASFNSRAALNGHIRIHGGTARNSPTPSSTSTVERRTVPVTSSNICHPDSTEEYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVKRKEKETPSSTSYELSVPSPFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01105853;
90% Identity
iTF_00792475;
80% Identity
iTF_00792475;