Hmer001406.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- -
- Assembly
- GCA_951812935.1
- Location
- OX638358.1:13456096-13456404[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-09 3.4e-06 27.5 0.0 5 41 1 37 1 40 0.94 2 2 7.3 4.8e+03 -1.7 0.0 21 30 81 90 80 91 0.84
Sequence Information
- Coding Sequence
- ATGGACGAGGCGTTAACCAAATTATCGGAGGGAGTTATTGGTTTCAATAAAGCTCATAGACAATACAACATCCCTAAGCCAACGTTACGACGTAATTTTAAAGGAATAAATAAGAATACCAAATTTGGAAGACCTAAGGATATGACTGAAAATATGGAGAAGGAGTTGGTTGCACACGTTCTCATTTTAGAATCAAGCTTTTTTGGGCTTACTGCAACTGATCTAAGAACACTTGCTTATCAATTGgctgaaaaatacaaattaccACACCGTTTTAATAGAGAAAAAGAAATTGCAGGGAAGAAGTAG
- Protein Sequence
- MDEALTKLSEGVIGFNKAHRQYNIPKPTLRRNFKGINKNTKFGRPKDMTENMEKELVAHVLILESSFFGLTATDLRTLAYQLAEKYKLPHRFNREKEIAGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01096545;
- 90% Identity
- -
- 80% Identity
- -