Hmer026410.1
Basic Information
- Insect
- Hermaeophaga mercurialis
- Gene Symbol
- cheC
- Assembly
- GCA_951812935.1
- Location
- OX638365.1:748799-750769[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-10 1.8e-07 31.6 0.0 1 42 15 56 15 59 0.94
Sequence Information
- Coding Sequence
- atgccaagaaaatatattcgaaGAACTACGCGGAGCTCATGGGATGAAGATTCCTTAAAAAGAGCAATtgttgaaattacaaaaaaaaatatttctatcagAGCTGCAGCCAGAATGTTTCAAGTACCCTATACCACTTTACAGGACAGGCTCAGAGGGcgatttgaacaaaaaaaaattgtactggGTAGAAAACCAGTTTTTTCAGTAGAGCAGGAAAAAGAAATTGCTTCTACAATTTTGTCAATGTCTAAACAGTTTTATGGGTTGACAGCCGAAAGTATCCGTTCTCTGGTATTTCGATTTGCAGAATTAAACAACGTAGTGCACCgtttcaataaagaaaaaaatatgtgtggCAAAGACTGGCTGTATTCTTTTATGGCTCGAAATCCTGAACGTGCATTCAGAAAACCGGAAGCCACGAGTATTAATAGAGTAActggatttaataaaatagaaattgacatattttttaataatttggaatCACTCTACAGTATCCACAAATTTGAAAGTCATAGAATATATAATGTTGACGAAACTGGCGTCACGAATGTCCACAATCCAGGTCGCATAGTGGCAAAGAAAGGACAGAAACAGGTGGGAGCCATTACTAGTGGAGAAAGAGGCCAAACGACAACTATTGTTTGCTGTCTAAACGCATCCGGTCAATATATCCCTCcaatgttcatttttaaaaggaaGAGGATGAAGGAAGGGCTAGATAGAAATGGACCGATTGGAGCCTTATATAGGTGTTCAAAATCAGGATGGATCACCGAAGAGCTGTTCACAGAATGGTTGAAGCATTTTACCAGATTTTCTCATCCCACTCCAGACAAACCTGTTCTTTTACTCCTTGATAATCACTCGACACACTGTAGTTTACCTtcctacaatttttgtaaatcttcAGGGATAATCATGCTATCTATTCCACCCCACACGTCTCATCGTATCCAGCCATTAGATGTTACATTCTATAAGCCACTGAAAACTGCATATCACCAGGAATGCGACAAATACataagaacaaaaaattatgaGAAGATCAACCAAACAGACATAGCTGAACTTTTTGCGAATGCTTACAATAGGGCAGCGACTATTGAAAAGGGAGTAAACGGGTTTAAAGTGACTGGAATATGTCCTGTTAATAGACATATCTTTAGCGAGGAAGAGTATGCACCCATAGGAGAGAAAACCGATGAAAGGGAAAATAATGATCATCCTATAGAGCACCGAACACCTTCGCCTTCGGAATCTAATGCTACAGTTTCACAGAACTTAAATAGTAAGTCCTCCCCCCGTACACTTGGTCGAACGTCTTCACCTAAACCTGGACCTAGTGGATTGAGTTCCAAAAAACTGAATCATCCTATACAGCACCAAACACCTTCGCCGTCAGAATCTAATGGTACGGTTTCACAGAAATTAAATAGTAAGTTCTCTCCCCGTAGACTCGGTCGAACTTCTTCACCCAAACCAGGACCAAACTCTAGCCTTAGCCTGGAAGAAATTTTTGAGGACAACTTAACCGATGATGAAGATAAAACCATAAAAGTGATTGAAAAAACTCTTAATGTGTCATTTAAAGACCTATGTCCCAGGCCAGTCTTGCAACCAAAAACCTCAAATAGAAAAAAGCAACATTCTGCGTTGTTAACTGCTACACCATTAAAAGAGGAATTggaggaaaaagaagaaaaaaaacaaaaaaaattaaatcaggaAAAATTGAAGAATGCAAAAAAGAATATCAATACTACTGCTAAACtgaagaataaaaagaaaacagttAACGTTACAGAAAGAGAAAATAAGGAACACGATATTTGCTCCGTTTGTGAAGAATTTGGATCTAATAACGAGATTTGGTGGCGATGTCGTTCATGCGGTTCATGGGCCCATTCTAAATGTACTGGTGCAGGCAAAGCATCCGAATATATGTGTGAAGACTGTGTCTAA
- Protein Sequence
- MPRKYIRRTTRSSWDEDSLKRAIVEITKKNISIRAAARMFQVPYTTLQDRLRGRFEQKKIVLGRKPVFSVEQEKEIASTILSMSKQFYGLTAESIRSLVFRFAELNNVVHRFNKEKNMCGKDWLYSFMARNPERAFRKPEATSINRVTGFNKIEIDIFFNNLESLYSIHKFESHRIYNVDETGVTNVHNPGRIVAKKGQKQVGAITSGERGQTTTIVCCLNASGQYIPPMFIFKRKRMKEGLDRNGPIGALYRCSKSGWITEELFTEWLKHFTRFSHPTPDKPVLLLLDNHSTHCSLPSYNFCKSSGIIMLSIPPHTSHRIQPLDVTFYKPLKTAYHQECDKYIRTKNYEKINQTDIAELFANAYNRAATIEKGVNGFKVTGICPVNRHIFSEEEYAPIGEKTDERENNDHPIEHRTPSPSESNATVSQNLNSKSSPRTLGRTSSPKPGPSGLSSKKLNHPIQHQTPSPSESNGTVSQKLNSKFSPRRLGRTSSPKPGPNSSLSLEEIFEDNLTDDEDKTIKVIEKTLNVSFKDLCPRPVLQPKTSNRKKQHSALLTATPLKEELEEKEEKKQKKLNQEKLKNAKKNINTTAKLKNKKKTVNVTERENKEHDICSVCEEFGSNNEIWWRCRSCGSWAHSKCTGAGKASEYMCEDCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00792039; iTF_00792043; iTF_00792044;
- 90% Identity
- iTF_00792039;
- 80% Identity
- -